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. 2019 Apr 2;5(4):e000263. doi: 10.1099/mgen.0.000263

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© 2019 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 2. — Core genome phylogeny, AMR and virulence profiles. (a) Core genome phylogeny of 82 ST11 outbreak isolates with the three-lineage structure highlighted in colour, as in Fig. 1. The three tip points marked with an asterisk (*) identify those isolates assigned as hypervirulent based on the presence of the genes rmpA, rmpA2 and/or the iuc operon. (b) Antimicrobial resistance gene complement and inferred virulence profiles of the 82 ST11 outbreak isolates shown in (a). Coloured squares give the presence of AMR genes and genetic markers associated with virulence, with the colour of AMR gene presence providing the antibiotic drug class to which resistance is conferred, as given in the legend to the right.