Table 2. Percentage comparison of each Symbiodiniaceae sub-generic genotype per gene per treatment.

23S (%)	chvA12	chvA14	chvA16	chvA19	chvA2	chvC1	HM032148	HM032167
S141 (Pooled)	0.09	0.137	0.209	0.166	80.911	14.897	0.583	3.006
S141 (Control)	0.136	0.146	0.204	0.182	81.4	14.208	0.573	3.151
S142 (Pooled)	0.16	0.156	0.237	0.09	96.504	0	0	2.853
S142 (Control)	0.154	0.125	0.205	0.137	96.59	0	0	2.79
S143 (Pooled)	0.138	0.113	0.237	0.182	95.847	0	0	3.482
S143 (Control)	0.133	0.146	0.236	0.112	95.869	0	0	3.504

Notes:

Percentage comparison of each Symbiodiniaceae sub-generic genotype recovered using the three amplicon markers in “Pooled” versus single “Control” markers (see Table 1). The proportion of each sub-generic type between “Pooled” and “Controls” is almost identical for the 23S marker, but shows some minor differences for the ITS2 and LSU markers (gray shades).

^*One control sample (S143 ITS2 only) failed the sequencing resulting in only 130 raw reads (see Table 1).