Table 2. Primer sequences used in this study.
Target gene | Primer | Primer sequence (5’ to 3’) |
Expected amplicon size (bp) |
|
---|---|---|---|---|
cytochrome b | outer | L.cyt-AS | GCGGAGAGRARGAAAAGGC | 978 |
(cyt b) | L.cyt-AR | CCACTCATAAATATACTATA | ||
inner | L.cyt-S | GGTGTAGGTTTTAGTYTAGG | 866 | |
L.cyt-R | CTACAATAAACAAATCATAATATRCAATT | |||
cytochrome oxidase | outer | L.COII-1S | AACATAGTTCTCATTGCAGA | 954 |
subunit II—NADH | L.COII-1R | ACAMCGRCCAGGTTCTCTAC | ||
dehydrogenase subunit 1 | inner | L.COII-2S | AATGCAACATGCAGTTATWA | 736 |
(COII-ND1) | L.COII-2R | AATGAATGTATAACATCAAC | ||
heat shock protein 70 | outer | L.HSP-OS | GGGCACGACGTACTCGTGCG | 1,931 |
(hsp70) | L.HSP-OR | AGTCGACCTCCTCGACCTTG | ||
inner | L.HSP-IS2 | CCGTCGTACGTTGCGTTCAC | 1,735 | |
L.HSP-IR2 | TGCTCTGGTACATCTTGGTC | |||
outer* | L.HSP-Ty1S | GGCGAGCGCGCGATGACGAA | 847 | |
L.HSP-OR | AGTCGACCTCCTCGACCTTG | |||
inner* | L.HSP-Ty2S | CGTTCGACTTGTCCGGCATC | 468 | |
L.HSP-IR2 | TGCTCTGGTACATCTTGGTC | |||
mannose phosphate | outer | L.MPI-OS2 | GCCTGGGGCAAGRATGCCGC | 1,214 |
isomerase | L.MPI-OR | CTCAAGTCGTTGGTCGACGC | ||
(mpi) | inner | L.MPI-IS2 | CGTCCAGCTTCGTGGCRAAG | 1,130 |
L.MPI-IR2 | GCCGTACGGYACCGCAAAGC | |||
6-phosphogluconate | outer | L.6PGD-OS | GAACGACCTCGGYATTATCG | 1,346 |
dehydrogenase | L.6PGD-OR | GACACCAGCTGTCCGTACGG | ||
(6pgd) | inner | L.6PGD-IS | GCCCTGAACATCGCCGAGAA | 1,272 |
L.6PGD-IR | CGTGTACATGGCGTTGATGT |
*The primer sets were used for the PCR-RFLP analysis to differentiate L. (V.) guyanensis from L. (V.) panamensis.