Table 2. Information on the B-cell epitope prediction algorithms employed.
Algorithm | Details | n |
---|---|---|
ABCPred | Predicts antigenic regions of fixed even length and assigns a score, ranging from zero to one, for the whole predicted k-mer. | 20 |
lbtope | Scans all possible 15mers with one AA offset on all the submitted sequences. A numeric score as well as the probability of correctnesses of each prediction are outputted. | 20 |
EpiQuest-B | Calculates individual scores per AA residue (AGR) and the final peptides scores are ranked by the relative immunogenicity index, which corresponds to the curve (AUC) in a plot residue position vs. AGR. | 20 |
Bepipred | Assigns a score for each AA residue on the submitted sequences. Predicted epitope regions can be of any length ≥ 1 AA with a score greater than the set cut-off (0.35 for default values). The antigenicity of the 16mers was calculated from the AUC in a plot residue position vs. score. | 20 |
Total | 80 |