Table 1.
Relative abundances (Phylum) | Day 0 | Day 7 | Day 14 | Day 28 | Day 42 | Day 91 | F 5,20 | P(>F) |
---|---|---|---|---|---|---|---|---|
Actinobacteria | 0.78a | 2.68bc | 3.92c | 2.26b | 5.75b | 9.73d | 45.65e | <0.0001 |
Bacteroidetes | 1.09a | 38.75b | 52.96c | 50.76c | 38.66b | 30.10d | 202.0 | <0.0001 |
Firmicutes | 39.17a | 8.38b | 1.22c | 1.29c | 1.09c | 0.61c | 341.76 | <0.0001 |
Proteobacteria | 58.89a | 50.14b | 41.81c | 44.13c | 50.37b | 52.00b | 20.24 | <0.0001 |
Verrucomicrobia | 0.01a | 0.00a | 0.01a | 1.48b | 3.94c | 3.13d | 167.52 | <0.0001 |
Low abundance | 0.05 | 0.06 | 0.09 | 0.08 | 0.19 | 4.43 | — | — |
Phyla with abundance <1% were grouped together. Results from mixed-effects models analyses are shown. Significance was determined using ANOVA. For each phylum, we report the relevant F statistic and degrees of freedom (F5,20) and significance (P(>F)). Letters indicate significant differences between time points (Tukey HSD test). Degrees of freedom were constant across all tests.