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. 2019 May 16;6:60. doi: 10.1038/s41597-019-0067-9

Table 7.

Statistics of predicted genes.

Gene set Number Average transcript length (bp) Average CDS length (bp) Average exons per gene Average exon length (bp) Average intron length (bp)
Ab initio
prediction
Augustus 29,895 20,126.36 1,083.78 5.51 196.7 4,222.41
GlimmerHMM 163,252 12,105.64 451.4 3.91 115.37 4,001.41
SNAP 83,162 36,326.76 549.05 3.61 152.28 1,3731.58
Homolog prediction Alligator sinensis 57,621 9,467.09 794.29 3.45 230.02 3,535.42
Chelonia mydas 37,629 15,048.25 1,093.96 4.9 223.12 3,575.20
Chrysemys picta bellii 50,264 11,904.42 997.94 4.25 234.74 3,354.46
Deinag kistrodon acutus 48,759 9,535.70 977.63 3.55 275.28 3,354.26
Gallus gallus 45,081 11,902.30 950.46 3.91 243.04 3,762.56
Gekko japonicus 34,511 14,745.27 1,136.85 4.8 236.7 3,578.43
Nanorana parkeri 45,954 11,607.88 1,038.09 3.75 276.62 3,839.62
Parus major 41,843 13,708.70 1,120.03 4.2 266.87 3,937.77
Pelodiscus sinensis 46,338 11,270.86 981.39 4.05 242.04 3,368.40
Philomachus pugnax 74,533 7,567.03 696.45 3.09 225.04 3,279.82
Xenopus leavis 38,766 11,659.15 1,052.39 4.05 260 3,480.37
RNASeq PASA 106,250 23,132.29 1,040.89 5.91 176.10 4,498.48
Cufflinks 101,071 32,403.47 3,407.83 6.79 502.11 5,010.49
EVM 396,95 17,966.58 987.68 5.19 190.45 4,056.02
Pasa-update* 39,212 21,180.40 1,029.81 5.39 191.11 4,591.49
Final set* 25,995 30,713.64 1,298.80 7.33 177.28 4,649.67

*UTR regions were contained.