Table III.
Breast cancer-specific mRNAs in the competing endogenous RNA network.
| mRNA | Gene ID | Expression change | log2 FC (T/N) | P-value | FDR |
|---|---|---|---|---|---|
| TTN | ENSG00000155657 | Downregulated | −4.950085607 | 0.001 | 0.001 |
| CHRDL1 | ENSG00000101938 | Downregulated | −4.384645164 | 5.38×10−246 | 8.81×10−244 |
| HCAR2 | ENSG00000182782 | Downregulated | −3.359595565 | 2.72×10−233 | 3.83×10−231 |
| TGFBR2 | ENSG00000163513 | Downregulated | −2.148190475 | 4.53×10−182 | 4.04×10−180 |
| AKAP12 | ENSG00000131016 | Downregulated | −2.630546355 | 1.93×10−180 | 1.68×10−178 |
| SPRY2 | ENSG00000136158 | Downregulated | −2.373343848 | 3.08×10−179 | 2.63×10−177 |
| KLHL40 | ENSG00000157119 | Downregulated | −7.140824495 | 5.06×10−150 | 3.06×10−148 |
| SAMD5 | ENSG00000203727 | Downregulated | −2.921601554 | 1.42×10−134 | 5.06×10−150 |
| TCEAL7 | ENSG00000182916 | Downregulated | −2.087672875 | 1.82×10−121 | 7.64×10−120 |
| KIT | ENSG00000157404 | Downregulated | −2.904876101 | 5.47×10−120 | 2.24×10−118 |
| CCNB1 | ENSG00000134057 | Upregulated | 2.641558633 | 5.60×10−119 | 2.22×10−117 |
| CHL1 | ENSG00000134121 | Downregulated | −2.893484253 | 3.51×10−115 | 1.31×10−113 |
| WASF3 | ENSG00000132970 | Downregulated | −2.100371097 | 1.12×10−111 | 3.94×10−110 |
| FGF2 | ENSG00000138685 | Downregulated | −2.663380621 | 2.96×10−102 | 8.7×10−101 |
| SHCBP1 | ENSG00000171241 | Upregulated | 2.674370272 | 3.03×10−87 | 6.84×10−86 |
| SERTM1 | ENSG00000180440 | Downregulated | −3.596825432 | 3.8×10−81 | 7.75×10−80 |
| KPNA2 | ENSG00000182481 | Upregulated | 2.232771491 | 8.08×10−81 | 1.64×10−79 |
| NTRK2 | ENSG00000148053 | Downregulated | −2.532210134 | 3.89×10−70 | 6.46×10−69 |
| CCNE2 | ENSG00000175305 | Upregulated | 2.495744882 | 6.12×10−70 | 1.01×10−68 |
| SFRP1 | ENSG00000104332 | Downregulated | −2.49717591 | 1.76×10−46 | 1.59×10−45 |
| PARD6B | ENSG00000124171 | Upregulated | 2.263852741 | 8.63×10−35 | 5.35×10−34 |
| ELAVL2 | ENSG00000107105 | Upregulated | 2.693339772 | 2.05×10−34 | 1.25×10−33 |
| FGFR3 | ENSG00000068078 | Upregulated | 2.472470941 | 5.52×10−32 | 3.06×10−31 |
| CDH2 | ENSG00000170558 | Upregulated | 2.639030107 | 4.82×10−28 | 2.26×10−27 |
| CCL20 | ENSG00000115009 | Upregulated | 2.568683156 | 1.40×10−24 | 5.69×10−24 |
| SLC1A1 | ENSG00000106688 | Upregulated | 2.352249029 | 3.02×10−21 | 1.06×10−20 |
| HOXB5 | ENSG000001200755 | Upregulated | 2.001121261 | 1.91×10−15 | 5.15×10−15 |
FC, fold change; T/N, tumor/normal; FDR, false discovery rate.