Table 1.
List of nucleotide polymorphism in TaSSIV with their effects on codons and variation in amino acid.
| No. | Gene | Genotype | Allele | Mutation Type | Variation in Amino Acid |
|---|---|---|---|---|---|
| 1 | TaSSIV-A | Laoqiaomai | A1447G | Non-coding | |
| 2 | Sankecun | T1455G | Non-coding | ||
| 3 | Wenmai-6 | C1563T | Non-coding | ||
| 4 | Yangmai-158 | A1673T | Non-coding | ||
| 5 | Yangmai-158 | C2436T | Missense | R77C | |
| 6 | Guinong-10 | T2073G | Non-coding | ||
| 6 | Zhongzhou-741 | A2403C | Missense | I66L | |
| 8 | Mahuaban | G5081A | Intron | ||
| 9 | Huoliyan | C5952T | Intron | ||
| 10 | Huangshuibai | T6013: | Intron | ||
| 11 | Guinong-11 | G2143A | Non-coding | ||
| 12 | TaSSIV-B | Dingxingzhai | C1529T | Missense | S149L |
| 13 | Pingyuan-50 | C1560T | Silent | F159= | |
| 14 | Dabaimai | A2234G | Missense | K384R | |
| 15 | Lumai-1 | T3314G | Intron | ||
| 16 | Lumai-1 | T3325G | Intron | ||
| 17 | Xinmai-18 | A3478ATT | Intron | ||
| 18 | Baipixiaomai | C6107T | Silent | I822= | |
| 19 | Xiaobaimai | G6329A | Intron | ||
| 20 | Shahkar-95 | A2950: | Intron | ||
| 21 | Drawar-97 | A2991G | Intron | ||
| 22 | Blue silver | C3457T | Intron | ||
| 23 | Lasani | G4115CTT | Intron | ||
| 24 | Kohistan | C4176T | Intron | ||
| 25 | Marvi | T3268G | Intron | ||
| 26 | TaSSIV-D | Zijuhong | T5904: | Intron | |
| 27 | Hongchumai | A6168C | Intron | ||
| 28 | Hongmai | G6485: | Intron | ||
| 29 | Hongmai | T6440C | Intron | ||
| 30 | Kabka-3 | A3387: | Intron | ||
| 31 | Chumai | C3593G | Silent | G454= | |
| 32 | Yangmai | C3899G | Silent | V505= | |
| 33 | Hongpidongmai | T3981A | Missense | S533T | |
| 34 | FSD-08 | C5849T | Intron | ||
| 35 | BWP-6309 | G6164T | Intron | ||
| 36 | Manthar | G6070A | Missense | V800I | |
| 37 | Kohistan-97 | A6540G | Missense | T841A | |
| 38 | Sehar | T4016C | Silent | Y533= |
Note: only one accession was listed as a representative due to limited space. “:” Deletion; “=” No change in amino acid.