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. 2018 Dec 21;17(6):1142–1153. doi: 10.1111/pbi.13044

Figure 4.

Figure 4

Illustration showing differences between glanded and glandless cotton for GoPGF (synonym CGF3) gene in A‐ and D‐subgenome. (a) ACGF3 in glanded (GVS4) cotton. (b) ACGF3 in glandless (GVS5) cotton showing four SNPs (white lines), one deletion (pink line) and a transposon insertion. The Copia‐like, retrotransposon is 5.1 kb in size. Red arrows represent direct repeats. The long thin arrow indicates direction and size of an open reading frame. Functional domains are: 1: gag‐polypeptide of LTR copia‐type, 2: GAG‐pre‐integrase domain, 3: Integrase core domain, 4: Reverse transcriptase (RNA‐dependent DNA polymerase), 5: Ty1/Copia family of RNase HI in long‐term repeat retro elements. (c) DCGF3 in glanded (GVS4) cotton. (d) DCGF3 in glandless (GVS5) cotton showing 17 SNPs (white lines), three deletions (pink lines) and two insertions (blue lines).