Table 4.
The ligands of DOT1L and their scores valued by Glide, Autodock vina and DNN model.
| Label | Structure | Smiles | pIC50 | Glide score | Vina score | DNN score |
|---|---|---|---|---|---|---|
| C170206_10 | ![]() |
COC1 = CC = CC(= C1)C1 = NN2C(CN3N = NC4 = CC = CC = C34) = NN = C 2S1 |
5.19 | −7.627 | −8.5 | 0.8542 |
| C170206_15 | ![]() |
C(N1N = NC2 = CC = CC = C1 2)C1 = NN = C2 SC(= NN12)C 1 = CC = C2OC OC2 = C1 |
5.40 | −7.915 | −8.4 | 0.9927 |
| C170206_16 | ![]() |
C(N1N = NC2 = CC = CC = C1 2)C1 = NN = C2SC(= NN12)C 1 = CC = C2OC COC2 = C1 |
5.08 | −7.898 | −9.9 | 0.9821 |
| C170206_17 | ![]() |
CC(C)(C)C1 = CC = C(C = C1) C1 = NN2C(C N3N = NC4 = C C = CC = C34) = NN = C2S1 |
5.35 | −5.374 | −8.8 | 0.555 |
| C170206_39 | ![]() |
BrC1 = CC (= CC = C1)C1 = NN2C(CN3C = NC4 = CC = C C = C34) = NN = C2S1 |
5.39 | −8.233 | −8.8 | 0.9007 |
| C170206_6 | ![]() |
FC1 = CC = CC (= C1)C1 = NN2 C(CN3N = NC 4 = CC = CC = C 34) = NN = C2S1 |
5.08 | −6.629 | −8.7 | 0.8713 |
| C170206_9 | ![]() |
FC1 = CC = C(C = C1)C1 = NN2 C(CN3N = NC 4 = CC = C C = C34) = N N = C2S1 |
5.33 | −7.839 | −8.4 | 0.9439 |
| C170214_3 | ![]() |
NC(= O)CN C(= O)NC1 = C C2 = C(C = C N2C2 = C(Cl) C = CC = C2) C = C1 |
5.05 | −8.322 | −8.3 | 0.6092 |
| C170214_4 | ![]() |
ClC1 = CC = CC = C1N1C = CC2 = C1C = C(NC(= O) NCC(= O)NC CCN[C@@H]1CC CN(C1)C1 = C3C = CNC3 = NC = N 1)C = C2 |
8.4 | −9.432 | −8.3 | 0.0141 |
| C170214_5 | ![]() |
ClC1 = CC = C C = C1N1C = C C2 = C1C = C (NC(= O)NCC (= O)NCCC CN[C@@H]1CCCN (C1)C1 = C3C = C NC3 = NC = N1) C = C2 |
8.4 | −7.773 | −9.6 | 0.8417 |
| C170214_6 | ![]() |
CN(CCCNC (= O)CNC(= O)NC1 = CC2 = C(C = C N2C2 = C C = CC = C2 Cl)C = C1)[C @@H]1CCCN(C1) C1 = C2C = C NC2 = NC = N1 |
9.82 | −10.445 | −9.2 | 0.9239 |
| C170214_7 | ![]() |
CN(CCCNC(= O) CNC(= O)NC1 = C C = C2SC(Cl) = C (C2 = C1)C1 = C C = CN = C1C) [C@@H]1CCC N(C1)C1 = C2 C = CNC2 = N C = N1 |
8.52 | −9.125 | −8.8 | 0.9996 |
| C180224_6 | ![]() |
O1C = CC = C 1C = CC1 = N N2C(S1) = NN = C 2C1 = CC = CC = C1 |
5.15 | −5.67 | −7.9 | 0.8878 |
| C180224_7 | ![]() |
CC1 = CC = C C(= C1)C1 = NN = C2SC(C = CC3 = CC = CO3) = NN12 |
5.03 | −7.471 | −8.3 | 0.6535 |
| C180224_9 | ![]() |
COC1 = C(C = C C = C1)C1 = NN = C2SC(C = CC3 = CC = CO3) = NN12 |
5.01 | −6.375 | −7.8 | 0.9412 |
| C180722_3a | ![]() |
CC1 = CC(N) = C2 C = C(NC3 = NC (NC4 = CC = C5N = C(C)C = C(N)C5 = C4) = CC(C) = N3)C = C C2 = N1 |
5.82 | −6.461 | −9.8 | 0.7206 |
| C180722_3b | ![]() |
CC1 = NC(NC2 = CC = C3N = C(C)C = C(O) C3 = C2) = NC (NC2 = CC = C3N = C(C)C = C(O)C3 = C 2) = C1 |
5.36 | −7.745 | −9.1 | 0.8655 |
| C180722_3d | ![]() |
CC1 = NC2 = C C = C(NC3 = C C = NC(NC4 = C C = C5N = C (C)C = C(N)C5 = C4) = N3)C = C2C (N) = C1 |
5.97 | −8.945 | −10.1 | 0.7807 |
| C180722_3e | ![]() |
CC1 = NC2 = C C = C(NC3 = CC (NC4 = CC = C 5N = C(C)C = C(N)C5 = C4) = NC = N3) C = C2C (N) = C1 |
5.97 | −6.465 | −9.3 | 0.7952 |
| C180722_8b | ![]() |
CC1 = NC(NCCCN C(= O)NC2 = C C = C(C = C2) C(C)(C)C) = NC (NC2 = CC = C 3N = C(C)C = C (N)C3 = C2) = C1 |
5.11 | −5.558 | −8.3 | 0.9847 |
| C180722_8f | ![]() |
CN(CCNC(= O)NC 1 = CC = C (C = C1)C(C) (C)C)C1 = NC(NC2 = CC = C3N = C (C)C = C(N)C3 = C2) = CC(C) = N1 |
5.22 | −7.641 | −9.9 | 0.5408 |
| C180722_8h | ![]() |
CCN(CCNC(= O)N C1 = CC = C(C = C1)C(C)(C) C)C1 = NC(NC 2 = CC = C3 N = C(C)C = C (N)C3 = C2) = CC(C) = N1 |
5.24 | −5.082 | −8.6 | 0.2014 |
| C180722_8i | ![]() |
CCN(CCCNC(= O) NC1 = C C = C(C = C 1)C(C)(C)C)C 1 = NC(NC 2 = CC = C3 N = C(C)C = C (N)C3 = C2) = CC(C) = N1 |
5.1 | −5.542 | −9 | 0.9797 |
| C180722_9b | ![]() |
CC1 = NC(NCC CNC(= O)NC 2 = CC(= CC(= C2) C(F)(F)F)C (F)(F)F) = NC(NC2 = CC = C3N = C(C) C = C(N)C3 = C2) = C1 |
5.06 | −7.433 | −8.7 | 0.9993 |
| C180722_9e | ![]() |
CC1 = NC(NCC CCCCNC(= O)NC2 = CC(= CC(= C2)C(F) (F)F)C(F)(F)F) = NC(NC2 = CC = C3N = C(C)C = C(N)C3 = C2) = C1 |
5.45 | −7.664 | −9.3 | 0.9985 |
























