Table 1.
Association of 96 genes encoding heat shock proteins with overall survival of breast cancer patients from TCGA and KM plotter.
HSP family | Gene | OS (low vs high expression) | HSP family | Gene | OS (low vs high expression) | ||
---|---|---|---|---|---|---|---|
TCGA BRCA p-value | Kaplan_Meier plotter p-value | TCGA BRCA p-value | Kaplan_Meier plotter p-value | ||||
HSP70 | HSPA1A | 0,7898 | 0,0012** | HSP40 | DNAJA1 | 0,1737 | 0,0104* |
HSPA1B | 0,8009 | 0,0012** | DNAJA2 | 0,5296 | 0,062 | ||
HSPA1L | 0,2863 | 0,1784 | DNAJA3 | 0,6468 | 0,7976 | ||
HSPA2 | 0,00642** | 0,00045*** | DNAJA4 | 0,8641 | 0,19 | ||
HSPA4 | 0,2382 | 0,1713 | DNAJB1 | 0,1037 | 0,2173 | ||
HSPA4L | 0,9558 | 0,5283 | DNAJB2 | 0,4024 | 0,0965 | ||
HSPA5 | 0,642 | 0,3809 | DNAJB3 | N/A | N/A | ||
HSPA6 | 0,3907 | 0,478 | DNAJB4 | 0,3863 | 0,6261 | ||
HSPA7 | 0,6274 | N/A | DNAJB5 | 0,03838* | 0,6713 | ||
HSPA8 | 0,04814* | 0,0787 | DNAJB6 | 0,7771 | 0,4362 | ||
HSPA9 | 0,004824** | 0,0562 | DNAJB7 | 0,1804 | 0,0943 | ||
HSPA12A | 0,4018 | 0,7155 | DNAJB8 | N/A | 0,2438 | ||
HSPA12B | 0,398 | 0,4443 | DNAJB9 | 0,1394 | 0,2638 | ||
HSPA13 | 0,8888 | 0,5764 | DNAJB11 | 0,4576 | 0,958 | ||
HSPA14 | 0,1735 | 0,1348 | DNAJB12 | 0,6549 | 0,5622 | ||
HSP110 | HSPH1 | 0,5553 | 0,054 | DNAJB13 | 0,3657 | 0,0964 | |
HYOU1 | 0,445 | 0,5638 | DNAJB14 | 0,4799 | 0,9681 | ||
HSPB | HSPB1 | 0,5245 | 0,003** | DNAJC1 | 0,7878 | 0,6448 | |
HSPB2 | 0,2765 | 0,5531 | DNAJC2 | 0,5074 | 0,009** | ||
HSPB3 | N/A | 0,7777 | DNAJC3 | 0,967 | 0,2065 | ||
HSPB4 | N/A | 0,2363 | DNAJC4 | 0,1096 | 0,0555 | ||
HSPB5 | 0,05732 | 0,0211* | DNAJC5 | 0,1368 | 0,0294* | ||
HSPB6 | 0,5086 | 0,299 | DNAJC5B | 0,4402 | 0,8677 | ||
HSPB7 | 0,2002 | 0,1558 | DNAJC5G | N/A | 0,0282* | ||
HSPB8 | 0,3012 | 0,7576 | DNAJC6 | 0,07342 | 0,6954 | ||
HSPB9 | 0,9359 | 0,1577 | DNAJC7 | 0,719 | 0,304 | ||
HSPB10 | N/A | 0,7791 | DNAJC8 | 0,9024 | 0,6157 | ||
HSPB11 | 0,4479 | 0,19 | DNAJC9 | 0,6161 | 0,00000065**** | ||
HSPC (HSP90) | HSP90AA1 | 0,0009347*** | 0,0094** | DNAJC10 | 0,8865 | 0,4738 | |
HSP90AA3P | N/A | N/A | DNAJC11 | 0,4812 | 0,7795 | ||
HSP90AB1 | 0,04601* | 0,5055 | DNAJC12 | 0,2195 | 0,0906 | ||
HSP90B1 | 0,5217 | 0,3144 | DNAJC13 | 0,01078* | 0,5831 | ||
HSP90L | 0,1862 | 0,1497 | DNAJC14 | 0,2178 | 0,2195 | ||
Chaperonins | BBS10 | 0,8031 | 0,2716 | DNAJC15 | 0,5046 | 0,3538 | |
BBS12 | 0,4741 | 0,051 | DNAJC16 | 0,2662 | 0,00000096**** | ||
CCT1 | 0,009986** | 0,000016**** | DNAJC17 | 0,7579 | 0,0967 | ||
CCT2 | 0,04282* | 0,0000014**** | DNAJC18 | 0,4269 | 0,6657 | ||
CCT3 | 0,3363 | 0,0064** | DNAJC19 | 0,1643 | 0,0082 | ||
CCT4 | 0,02085* | 0,065 | DNAJC20 | 0,04307* | 0,0053** | ||
CCT5 | 0,09297 | 0,0064** | DNAJC21 | 0,445 | 0,6636 | ||
CCT6A | 0,002706** | 0,00067*** | DNAJC22 | 0,8126 | 0,7541 | ||
CCT6B | 0,6901 | 0,34 | DNAJC23 | 0,001951** | 0,056 | ||
CCT7 | 0,1599 | 0,0119* | DNAJC24 | 0,7272 | 0,3404 | ||
CCT8 | 0,223 | 0,00037*** | DNAJC25 | 0,6785 | 0,8495 | ||
HSPD1 | 0,5599 | 0,000004**** | DNAJC26 | 0,2249 | 0,7234 | ||
HSPE1 | 0,3572 | 0,0779 | DNAJC27 | 0,9823 | 0,0038** | ||
MKKS | 0,4983 | 0,4378 | DNAJC28 | 0,3508 | 0,2808 | ||
DNAJC29 | 0,9692 | 0,7073 | |||||
DNAJC30 | 0,2152 | 0,7974 |
Stratification into high-expression and low-expression groups was performed according to median expression of each HSP. P-value p ≤ 0,05 was considered as statistically significant. Six genes encoding HSPs marked in bold were identified as significantly associated with overall survival in both datasets and selected for further validation. *p ≤ 0,05; **p ≤ 0,01; ***p ≤ 0,001; ****p ≤ 0,0001.