Table 2. Summary of phylogenetic support for taxonomic groups of interest derived from concatenated chloroplast (cp) analyses and from the 18S BaliPhy analysis.
All Bayesian posterior probability values were converted to percentages; RAxML values are derived from 200 bootstrap pseudoreplicates. Blank cells indicate that the grouping of taxa was not present in the consensus tree.
| Analysis software | Data | Sphaeropleales s.l. | Scenedesminia | Volvocales + Sphaeropleaceae + Spermatozopsis | Sphaeropleaceae + Spermatozopsis | incertae sedis clade | Jenufa + Golenkinia |
|---|---|---|---|---|---|---|---|
| MrBayes | cp nt | 100 | 100 | 100 | 100 | 100 | |
| cp aa | 100 | 100 | 100 | 100 | |||
| cp nt 1st and 2nd positions | 100 | 70 | 100 | 100 | 100 | ||
| cp nt 3rd positions | 50 | 100 | |||||
| cp nt ambig | 100 | 100 | 100 | 100 | |||
| cp nt + 18S | 100 | 97 | 100 | 100 | 100 | ||
| RAxML | cp nt | 69 | 100 | 89 | 100 | 96 | |
| cp aa | 54 | 100 | 93 | 94 | |||
| PhyloBayes | cp nt | 100 | 100 | 100 | 100 | ||
| cp aa | 100 | 73 | 99 | 100 | |||
| SVDquartets | cp nt | 100 | 97 | 72 | |||
| BaliPhy | 18S nt | 84 | 57 |