Fig. 1.

Map of the Sacramento San Joaquin Delta and SFE. The black line denotes the Delta, which meets saltwater from San Francisco Bay in the SFE. BP is the state Harvey Banks Pumping Plant, part of the State Water Project (SWP), JP is the federal Bill Jones Pumping Plant, part of the Central Valley Project (CVP). Sac I is the particle insertion point on the Sacramento River, SJ I is the same on the San Joaquin River, and Exit denotes the Western boundary of the estuary for the purposes of DSM2 particle tracking. D10, D8, and D7 represent the three approximate locations with continuous monitoring of water quality, fish, and zooplankton (exact locations in Table S6), and are the sites for which chlorophyll a was modeled. Benthic organisms are monitored at D7, not at D8, and D10