Table 1.
Gene | Length of the amplified sequences (bp) | Number of SNP∗ | Average PIC | Number of haplotypes | Number of nonsynonymous substitutions∗∗ caused by SNP and INDEL |
---|---|---|---|---|---|
PvDREB1F | ORF: 882, intron: 288 | 10∗∗∗ | 0.432 | 5 | -∗∗∗∗∗ |
PvDREB2A | ORF: 600, intron: 650 | 9∗∗∗ | 0.412 | 6 | 1 |
PvDREB5A | ORF: 474, 483∗∗∗∗ | 1 | 0.475 | 2 | 0 (SNP) and 3 (INDEL) |
PvDREB6B | ORF: 957 | 18 | 0.408 | 5 | 9 |
∗SNPs from G40111 were not included for comparisons. ∗∗Number of amino acids changed due point mutations or frame shifts and INDEL. ∗∗∗Frame shifts were not accounted. ∗∗∗∗The size of the ORF was different between Andean (474 bp) and Mesoamerican (483 bp) due to an INDEL not accounted here. ∗∗∗∗∗Not analyzed since no complete sequences were obtained.