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. 2019 May 2;2019:9520642. doi: 10.1155/2019/9520642

Table 1.

Single-nucleotide polymorphisms, polymorphic information content (PIC), and number of haplotypes within the sequences of four PvDREB genes, based on 17 common bean genotypes.

Gene Length of the amplified sequences (bp) Number of SNP Average PIC Number of haplotypes Number of nonsynonymous substitutions∗∗ caused by SNP and INDEL
PvDREB1F ORF: 882, intron: 288 10∗∗∗ 0.432 5 -∗∗∗∗∗
PvDREB2A ORF: 600, intron: 650 9∗∗∗ 0.412 6 1
PvDREB5A ORF: 474, 483∗∗∗∗ 1 0.475 2 0 (SNP) and 3 (INDEL)
PvDREB6B ORF: 957 18 0.408 5 9

SNPs from G40111 were not included for comparisons. ∗∗Number of amino acids changed due point mutations or frame shifts and INDEL. ∗∗∗Frame shifts were not accounted. ∗∗∗∗The size of the ORF was different between Andean (474 bp) and Mesoamerican (483 bp) due to an INDEL not accounted here. ∗∗∗∗∗Not analyzed since no complete sequences were obtained.