Table 3. Distinct Phytophthora Operational Taxonomic Units (OTU) found in this study, and species and clade match ranked by number of reads across 14 sites in Scotland.
| Species | Clade | Number of sites | Total | Number of reads per sampled site | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | |||||
| 1 | P. pseudosyringae*/P. nemorosa/P. pluvialis/P. ilicis | 3 | 12 | 154,669 | 18,563 | 23,920 | 136 | 8,780 | 6,497 | 4,022 | 16,280 | – | 8,319 | – | 23,127 | 20,659 | 17,944 | 6,422 |
| 2 | P. austrocedri* | 8 | 13 | 74,098 | 1,490 | 5,207 | 6,586 | 8,584 | 521 | 13,857 | 9,499 | 2,241 | 12 | – | 7,878 | 16,131 | 1,525 | 567 |
| 3 | P. gonapodyides* | 6 | 11 | 64,237 | 9,503 | 6,584 | – | 12,732 | 885 | 686 | 5,534 | – | 1,489 | – | 7,857 | 8,542 | 2,697 | 7,728 |
| 4 | P. cambivora* | 7 | 11 | 40,374 | 1,277 | 1,682 | – | 1,569 | 6,574 | 12,949 | 2,787 | – | 2,449 | – | 796 | 3,006 | 1,179 | 6,106 |
| 5 | P. syringae* | 8 | 10 | 27,290 | 785 | – | 8,600 | 2,614 | 4,351 | 2,669 | 39 | – | 3,261 | 821 | – | 354 | – | 3,795 |
| 6 | P. ramorum | 8 | 11 | 16,491 | 748 | 504 | – | – | 572 | 1,710 | 631 | 4,135 | 3,136 | – | 717 | 894 | 2,396 | 1,148 |
| 7 | P. cactorum* | 1 | 12 | 15,704 | 830 | 891 | 1,761 | 3,989 | 2,743 | – | 921 | – | 149 | 427 | 1,305 | 588 | 895 | 1,205 |
| 8 | P. cryptogea* | 8 | 3 | 8,311 | – | – | – | – | – | 2 | – | 7,948 | – | – | – | 361 | – | – |
| 9 | P. chlamydospora | 6 | 5 | 8,042 | – | 552 | – | – | – | 2,811 | 208 | – | 2,911 | – | – | 426 | – | – |
| 10 | Unknown sp. 4 | 6 | 7,363 | 1,128 | – | – | – | 1,571 | – | 758 | – | – | – | – | 318 | 4,550 | 166 | |
| 11 | Unknown sp. 2 | 4 | 2 | 7,123 | 5,101 | – | – | – | – | – | – | – | – | 2,022 | – | – | – | – |
| 12 | P. plurivora* | 2 | 8 | 5,845 | 679 | – | – | – | – | 2 | 2 | 1,878 | 3,013 | 203 | 31 | 37 | – | – |
| 13 | P. psychrophila* | 3 | 1 | 4,761 | – | – | – | – | – | – | – | 4,761 | – | – | – | – | – | – |
| 14 | P. cinnamomi | 7 | 4 | 2,593 | – | – | – | – | – | 650 | 2 | – | 719 | – | – | 1,222 | – | – |
| 15 | P. uliginosa*/P. europaea*/P. flexuosa | 7 | 1 | 2,545 | – | – | – | – | – | – | – | – | – | – | – | – | – | 2,545 |
| 16 | P. primulae* | 8 | 2 | 2,328 | – | – | – | – | – | – | – | – | 2,326 | – | – | 2 | – | – |
| 17 | Unknown sp. 3 | 4 | 1 | 2,248 | – | – | 2,248 | – | – | – | – | – | – | – | – | – | – | – |
| 18 | Unknown sp. 5 | 1 | 1,637 | – | – | – | – | – | – | – | 1,637 | – | – | – | – | – | – | |
| 19 | Unknown sp. 8 | 1 | 1,592 | – | – | – | 1,592 | – | – | – | – | – | – | – | – | – | – | |
| 20 | P. obscura* | 8 | 3 | 1,273 | – | – | – | – | – | – | 39 | – | – | 774 | – | – | – | 460 |
| 21 | Unknown sp. 6 | 2 | 874 | – | – | – | – | – | – | 738 | – | – | 136 | – | – | – | ||
| 22 | P. vulcanica* | 7 | 1 | 830 | 830 | – | – | – | – | – | – | – | – | – | – | – | – | – |
| 23 | P. lateralis | 8 | 3 | 713 | – | – | – | 294 | – | 197 | – | – | 222 | – | – | – | – | – |
| 24 | P. multivora* | 2 | 1 | 700 | – | – | – | – | – | – | – | – | – | – | – | 700 | – | – |
| 25 | Unknown sp. 12 | 1 | 666 | – | – | – | – | – | – | – | – | – | – | – | – | – | 666 | |
| 26 | P. hedraiandra* | 1 | 1 | 632 | – | – | 632 | – | – | – | – | – | – | – | – | – | – | – |
| 27 | Unknown sp. 10 | 1 | 1 | 540 | – | – | – | – | – | – | – | – | – | – | – | – | 540 | – |
| 28 | Unknown sp. 9 | 1 | 292 | – | – | – | – | – | – | – | – | – | – | – | – | 292 | – | |
| 29 | Unknown sp. 11 | 1 | 249 | – | – | – | – | – | – | – | – | – | – | – | – | – | 249 | |
| 30 | P. kernoviae* | 10 | 2 | 226 | 81 | – | 145 | – | – | – | – | – | – | – | – | – | – | – |
| 31 | P. pini* | 2 | 3 | 100 | – | – | – | – | – | – | 86 | – | – | – | 2 | 12 | – | – |
| 32 | Unknown sp. 7 | 1 | 86 | – | – | – | – | – | – | – | – | – | – | – | 86 | – | – | |
| 33 | Unknown sp. 1 | 1 | 75 | 75 | – | – | – | – | – | – | – | – | – | – | – | – | – | |
| 34 | P. hibernalis* | 8 | 2 | 65 | – | – | 29 | – | – | – | – | – | – | – | – | 36 | – | – |
| 35 | P. megasperma* | 6 | 1 | 50 | – | – | 50 | – | – | – | – | – | – | – | – | – | – | – |
Note:
*
Species known to produce oospores as survival structures.