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-Example tools and approaches for classifying coding and non-coding transcripts.
| Approach | Instances | Example tools |
|---|---|---|
| Coordinate overlap | Known coordinates from good genome annotations | BEDTools, glbase |
| Homology based | Known sequence and reasonable databases | BLAST, BLAT, GMAP, AUGUSTUS |
| Machine learning | Characterizing features of coding and noncoding transcripts | CPAT, FELLnc, lncRScan-SVM, NRC |
