Table 1.
Transposons and repetitive elements in 10kb region surrounding the pop genes.
| Homologue | 5ʹ flanking region | Transposon type | 3ʹ flanking region | Transposon type |
|---|---|---|---|---|
| pepA | 1.2kb repetitive DNA | - | Gypsy 3–1 AF (+1000bp) | Retrotransposon |
| popH | Mariner 1-AF | DNA transposon | - | - |
| popO | 1kb repetitive DNA | - | 200bp repetitive DNA | - |
| popP | - | - | - | - |
| popS | Mariner 1-AF | DNA transposon | - | - |
| popA | flanking simple repeats | - | flanking simple repeats | - |
| popB | Copia-1 AT e-1 | Retrotransposon | I-5 AO | Retrotransposon |
| popC | Copia-1 Va-1 | Retrotransposon | Mariner 1-AF | DNA transposon |
| popD | popE gene directly upstream | - | Ribosomal RNA encoding gene | |
| popE | popD gene directly upstream | - | Copia 71 BG1 | Retrotransposon |
| popF | Copia 71 BG1 | Retrotransposon | - | - |
| popG | Mariner fragment | DNA transposon | - | - |
| popI | - | - | 2.5kb repetitive DNA | - |
| popJ | flanking simple repeats | - | I-5 AO | Retrotransposon |
| popK | - | - | hAT-1 AN | DNA transposon |
| popL | - | - | 1 kb repetitive DNA Copia-1 VA1 | Retrotransposon |
| popM | I-5 AO | Retrotransposon | 100bp repetitive DNA | |
| popN | hAT 1-AN | DNA transposon | - | - |
| popQ | - | - | - | - |
| popR | 2× Gypsy (3–1 AF and 5PGr-1) |
Retrotransposon | - | - |
| popT | - | - | 200bp repetitive DNA | - |
| popU | I-5 AO | Retrotransposon | Mariner 1-AF | DNA transposon |
| popV | flanking simple repeats | - | - | - |
“Simple repeats” are local and sequential and identified by repeatmasker.[22]
“Repetitive DNA” are regions identified in more than one location in the genome that is un-annotated.