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PAT Genomic Dataset Preprocessing: RNA-Seq. RNA-Seq pre-processing begins with the identification of datasets that are of relevance to placental research through a structured query in GEO. The data and metadata for relevant datasets are extracted from GEO. High-throughput data from SRA and output through PAT. This output includes the ability for users to download read/transcript quantification files, PCA widget data, and gene level abundance matrix data for analytics.
