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. 2019 May 20;14(5):e0217054. doi: 10.1371/journal.pone.0217054

Table 2. Primer sequences for the qPCR of rumen microorganisms.

Item Forward/reverse (F/R) primer sequences (5’-3’) Amplification size/bp GenBank number
Fungi F: TGACTCAACACGGGGAAACT
R: CCAACTAAGAACGGCCATGC
105 JX240418.1
Protozoa F: TGACTCAACACGGGGAAACT
R: TCCACCAACTAAGAACGGCC
109 AJ810076.1
Bacteria F: CCTACGGGAGGCAGCAG
R: ATTACCGCGGCTGCTGG
181 [18]
R. flavefaciens F: TCT GGA AAC GGA TGG TA
R:CCTTTAAGACAGGAGTTTACAA
259 [19]
R. ablus F: ATGCCGCGGTGAATACGTT
R: TTCGACTGCTTCCTCCTTGC
107 X85098.1
F. succinogenes§ F: GATGAGCTTGCGTCCGATT
R: ATTCCCTACTGCTGCCTCC
139 EU606019.1

R. flavefaciens = Ruminococcus flavefaciens

R. albus = Ruminococcus albus

§F. succinogenes = Fibrobacter succinogenes