Table 2. Primer sequences for the qPCR of rumen microorganisms.
Item | Forward/reverse (F/R) primer sequences (5’-3’) | Amplification size/bp | GenBank number |
---|---|---|---|
Fungi | F: TGACTCAACACGGGGAAACT R: CCAACTAAGAACGGCCATGC |
105 | JX240418.1 |
Protozoa | F: TGACTCAACACGGGGAAACT R: TCCACCAACTAAGAACGGCC |
109 | AJ810076.1 |
Bacteria | F: CCTACGGGAGGCAGCAG R: ATTACCGCGGCTGCTGG |
181 | [18] |
R. flavefaciens† | F: TCT GGA AAC GGA TGG TA R:CCTTTAAGACAGGAGTTTACAA |
259 | [19] |
R. ablus‡ | F: ATGCCGCGGTGAATACGTT R: TTCGACTGCTTCCTCCTTGC |
107 | X85098.1 |
F. succinogenes§ | F: GATGAGCTTGCGTCCGATT R: ATTCCCTACTGCTGCCTCC |
139 | EU606019.1 |
†R. flavefaciens = Ruminococcus flavefaciens
‡R. albus = Ruminococcus albus
§F. succinogenes = Fibrobacter succinogenes