Table 2.
Ligand | Binding affinity (kcal/mol) | RMSD/upper bound | RMSD/lower bound |
---|---|---|---|
Abietic acid | − 10.2 | 0.807 | 0.793 |
Alloaromadendrene | − 9.1 | 4.912 | 1.104 |
Alpha-selinene | − 8.7 | 2.827 | 1.848 |
Alpha-terpineol | − 7.0 | 4.935 | 2.472 |
Beta-eudesmol | − 8.9 | 6.674 | 3.419 |
Beta-copaene | − 9.1 | 5.147 | 1.052 |
Beta-elemene | − 8.4 | 5.358 | 1.649 |
Bicyclogermacrene | − 8.7 | 4.612 | 1.590 |
Caryophyllene | − 8.6 | 4.242 | 1.146 |
Cedrelanol | − 8.5 | 4.739 | 2.126 |
Alpha-copaene | − 8.8 | 3.949 | 2.153 |
Cuminaldehyde | − 7.2 | 2.877 | 2.417 |
Cuscohygrine | − 7.4 | 6.079 | 0.290 |
Delta-cadinene | − 9.2 | 4.041 | 0.869 |
Delta-elemene | − 8.4 | 4.955 | 1.543 |
Dipentene (limonene) | − 7.1 | 1.985 | 0.422 |
Elemol | − 8.4 | 2.095 | 1.527 |
Eugenol | − 6.7 | 5.484 | 4.016 |
Gamma-cadinene | − 8.6 | 4.256 | 1.736 |
Gamma-elemene | − 8.8 | 5.566 | 1.669 |
Germacrone | − 9.3 | 3.229 | 1.670 |
m-cresol | − 5.8 | 2.386 | 0.649 |
p-cymene | − 7.5 | 1.537 | 0.084 |
Valencene | − 8.7 | 2.720 | 1.821 |
Alpha-humulene | − 9.0 | 4.558 | 1.410 |
Alpha-pinene | − 6.6 | 4.202 | 1.947 |
Beta-selinene | − 9.1 | 5.311 | 1.464 |
Alpha-bergamotene | − 7.8 | 5.508 | 1.797 |
RMSD root mean-square deviation is the measure of the average distance between the atoms