Table 5.
Top 20 GWAS results from model 3: SNP + race + kinship + BB exposure (n = 990; AA = 494, white = 496)
| SNP | A1 | A2 | MAF_AA | MAF_EA | MAF_All | Coef | P value | Group |
|---|---|---|---|---|---|---|---|---|
| rs149447933 | G | C | 0.01524 | NA | NA | 19.714 | 6.29E−09 | AA only |
| rs541284506 | A | G | 0.01714 | NA | NA | 17.634 | 8.59E−08 | AA only |
| rs535263906 | A | G | 0.02381 | NA | NA | 14.516 | 9.12E−08 | AA only |
| rs187251765 | A | C | 0.01333 | NA | NA | 19.092 | 1.88E−07 | AA only |
| rs139130723 | G | A | 0.01714 | NA | NA | 16.629 | 2.04E−07 | AA only |
| rs142803096 | C | G | 0.01714 | NA | NA | 16.629 | 2.04E−07 | AA only |
| rs11006544 | C | T | 0.01714 | NA | NA | 16.148 | 2.15E−07 | AA only |
| rs11110004 | C | T | 0.01143 | NA | NA | 19.544 | 2.60E−07 | AA only |
| rs112434206 | G | A | 0.02286 | NA | NA | 14.507 | 3.12E−07 | AA only |
| rs6498482 | T | C | 0.3752 | 0.588 | 0.4814 | − 2.987 | 3.16E−07 | Complete |
| rs143554223 | G | A | 0.01333 | NA | NA | 19.333 | 3.56E−07 | AA only |
| rs148467525 | A | G | 0.01333 | NA | NA | 19.333 | 3.56E−07 | AA only |
| rs188482801 | A | C | 0.03238 | NA | NA | 12.604 | 3.81E−07 | AA only |
| rs74056623 | A | G | 0.05238 | NA | NA | 9.378 | 5.55E−07 | AA only |
| rs114821210 | A | C | 0.01714 | NA | NA | 15.541 | 6.32E−07 | AA only |
| rs7188980 | C | T | 0.4143 | 0.6195 | 0.5167 | 2.859 | 6.63E−07 | Complete |
| rs148133894 | C | T | 0.00952 | NA | NA | 20.392 | 8.60E−07 | AA only |
| rs74056624 | A | G | 0.04952 | NA | NA | 9.350 | 9.24E−07 | AA only |
| rs188344082 | A | G | 0.04952 | NA | NA | 9.389 | 1.03E−06 | AA only |
| rs189919070 | T | C | 0.00762 | NA | NA | 22.630 | 1.06E−06 | AA only |