Table 1.
A summary of the transcriptome sequencing and assembly results in the fall dormant (FDT) and non-dormant (NDT) alfalfa roots
| Sample | Total Number | Total Length (bp) | Ave Length (bp) | N50 (bp) | |
|---|---|---|---|---|---|
| Raw reads | FDT | 90,343,369 | |||
| NDT | 138,968,136 | ||||
| Clean reads | FDT | 66,297,107 | |||
| NDT | 101,048,757 | ||||
| Contig | FDT+ NDT | 527,916 | 158,278,743 | 299.82 | 427 |
| Transcript | FDT+ NDT | 240,661 | 163,855,683 | 681 | 992 |
| Unigene | FDT+ NDT | 23,472 | 34,500,666 | 1470 | 2048 |
Ave Length: Average length of the assembled sequence
N50: The length of the contig, transcript or unigene corresponding to the sequence, which is added to 50% of the total assembled bases when the assembled sequences are sorted from long to short