Table 2:
Descriptive metrics of sardine genome assemblies
| Scaffolds | Spil_haploid1 | Spil_haploid2 | SP_G | UP_Spi |
|---|---|---|---|---|
| Largest | 6.835 Mb | 6.850 Mb | 6.843 Mb | 0.285 Mb |
| Number | ||||
| ≥100 kb | 874 | 872 | 890 | 309 |
| ≥10 kb | 8,301 | 8,298 | 8,760 | 18,863 |
| ≥1 kb (total) | 117,698 | 117,698 | 117,259 | 44,627 |
| L50/N50 | ||||
| ≥100 kb | 135/906.0 kb | 134/925.2 kb | 137/899.1 kb | 130/122.5 kb |
| ≥10 kb | 242/572.7 kb | 242/568.2 kb | 254/552.2 kb | 4,594/32.9 kb |
| ≥1 kb (total) | 859/102.9 kb | 860/102.7 kb | 903/96.6 kb | 6,797/25.6 kb |
| LG50/NG50 | 935/87.7 kb | 939/87.1 kb | 905/96.6 kb | 15,422/12.6 kb |
| Assembly size | ||||
| ≥100 kb | 469.371 Mb | 468.838 Mb | 473.550 Mb | 39.274 Mb |
| ≥10 kb | 622.165 Mb | 621.688 Mb | 636.491 Mb | 513.719 Mb |
| ≥1 kb (total) | 935.548 Mb | 935.082 Mb | 949.618 Mb | 641.169 Mb |
| Guanine-cytosine content | 43.9% | 43.9% | 43.9% | 44.5% |
| Nucleotides per 100 kb | 12,955 | 12,961 | 12,834 | 169 |
SP_haploid1/SP_haploid2: haploid genomes (UOTT01000000 and UOTU01000000). SP_G: consensus genome (NCBI representative genome assembly, GCA_900 499 035.1). UP_Spi: Illumina paired-end assembled genome from [20] (GCA_0 036 04335.1). Values for scaffolds ≥1, 10, and 100 kb are presented in separate rows.