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. 2019 May 21;14(5):e0216886. doi: 10.1371/journal.pone.0216886

Table 4. List of 27 candidate genes located in chromosomes 3, 7, 8, 10 and 11 for the fruit weight.

SNP ID Chromosome Position maf P.value Predicted protein GO Name InterPro GO Names
S03_126637882 3 126637882 0.27 1.76E-10 S-locus-specific glycoprotein S6 F:binding; F:electron transfer activity; C:membrane no IPS match
S03_144571942 3 144571942 0.25 5.60E-08 hypothetical protein BC332_25369 no IPS match
S03_130472754 3 130472754 0.22 1.26E-07 DNA/RNA polymerases superfamily protein F:binding; P:DNA metabolic process no GO terms
S03_127229794 3 127229794 0.26 1.94E-07 Lysine-specific demethylase P:phosphatidylserine biosynthetic process; C:integral component of membrane; F:transferase activity no GO terms
S03_131045471 3 131045471 0.26 2.71E-07 hypothetical protein T459_16762 F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; F:calcium ion binding; C:membrane no GO terms
S03_144926307 3 144926307 0.24 2.90E-07 Putative gag-pol polyprotein, identical F:nucleic acid binding; F:catalytic activity; F:zinc ion binding; F:1-deoxy-D-xylulose-5-phosphate synthase activity; P:DNA integration; P:terpenoid biosynthetic process no IPS match
S03_130816018 3 130816018 0.22 6.81E-07 PREDICTED: uncharacterized protein LOC107844328 F:ion binding; F:organic cyclic compound binding; F:heterocyclic compound binding no GO terms
S03_126408053 3 126408053 0.27 9.28E-07 Lysine-specific demethylase F:nucleic acid binding; P:gene expression; F:transferase activity; P:cellular nitrogen compound metabolic process; P:cellular protein metabolic process no GO terms
S03_223037785 3 223037785 0.48 1.05E-06 Malate dehydrogenase, glyoxysomal F:catalytic activity no IPS match
S03_223037803 3 223037803 0.48 1.05E-06 Malate dehydrogenase, glyoxysomal F:catalytic activity no IPS match
S03_139442074 3 139442074 0.26 1.11E-06 ATP-dependent DNA helicase SRS2-like protein C:integral component of membrane; P:oxidation-reduction process no IPS match
S07_233424834 7 233424834 0.15 3.94E-09 ATPase ASNA1 -like protein F:protein serine/threonine kinase activity; F:ATP binding; C:endoplasmic reticulum; P:generation of precursor metabolites and energy; P:protein phosphorylation; P:proteolysis; P:transport; F:cysteine-type peptidase activity; C:integral component of membrane; F:ATPase activity; P:protein insertion into ER membrane; P:negative regulation of transcription, DNA-templated no GO terms
S07_233499205 7 233499205 0.19 5.50E-09 Potassium transporter 5 P:cellular protein modification process; P:phosphate-containing compound metabolic process; F:methyltransferase activity; C:membrane; F:hydrolase activity; P:methylation; F:adenyl ribonucleotide binding; F:anion binding; C:intracellular part; F:catalytic activity, acting on a protein no IPS match
S07_251125166 7 251125166 0.37 6.81E-08 putative copia-type protein C:retrotransposon nucleocapsid; F:nucleic acid binding; F:motor activity; F:protein tyrosine phosphatase activity; F:ubiquitin-protein transferase activity; F:ATP binding; P:actin filament organization; F:protein tyrosine/serine/threonine phosphatase activity; P:DNA integration; C:integral component of membrane; C:myosin complex; P:protein ubiquitination; P:peptidyl-tyrosine dephosphorylation; F:ADP binding; F:actin filament binding C:retrotransposon nucleocapsid
S07_250424475 7 250424475 0.29 3.48E-07 uncharacterized protein LOC114075241 F:nucleic acid binding; F:RNA-DNA hybrid ribonuclease activity; P:DNA integration; P:RNA phosphodiester bond hydrolysis, endonucleolytic F:nucleic acid binding; F:RNA-DNA hybrid ribonuclease activity; P:DNA integration
S07_250605815 7 250605815 0.38 3.75E-07 TPR repeat-containing thioredoxin TDX C:cell; F:transferase activity no IPS match
S07_233424790 7 233424790 0.16 7.40E-07 ATPase ASNA1 -like protein F:protein serine/threonine kinase activity; F:ATP binding; C:endoplasmic reticulum; P:generation of precursor metabolites and energy; P:protein phosphorylation; P:protein dephosphorylation; P:proteolysis; F:protein tyrosine/serine/threonine phosphatase activity; F:cysteine-type peptidase activity; C:integral component of membrane; F:ATPase activity; P:protein insertion into ER membrane; P:negative regulation of transcription, DNA-templated no GO terms
S07_249749737 7 249749737 0.33 1.07E-06 ADP,ATP carrier protein, mitochondrial F:catalytic activity; C:membrane no IPS match
S08_106280443 8 106280443 0.33 3.85E-11 Agamous-like MADS-box protein AGL16 F:DNA-binding transcription factor activity; C:nucleus; P:regulation of transcription, DNA-templated no IPS match
S08_105353008 8 105353008 0.29 2.54E-10 Putative retrotransposon protein, identical F:carboxypeptidase activity; F:binding; P:nitrogen compound metabolic process; P:macromolecule metabolic process; P:primary metabolic process no IPS match
S08_106308670 8 106308670 0.31 3.35E-09 [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial F:binding no IPS match
S08_106726114 8 106726114 0.27 2.10E-08 PREDICTED: uncharacterized protein LOC107865331 F:nucleic acid binding; P:DNA integration no IPS match
S08_105142620 8 105142620 0.44 3.22E-07 PREDICTED: uncharacterized protein LOC107861928 F:zinc ion binding no IPS match
S08_105183429 8 105183429 0.29 4.79E-07 keratin, type I cytoskeletal 12-like F:protein tyrosine phosphatase activity; F:binding; P:proteolysis; P:transport; F:protein tyrosine/serine/threonine phosphatase activity; F:cysteine-type peptidase activity; C:integral component of membrane; P:peptidyl-tyrosine dephosphorylation; C:cytoplasmic part; C:membrane protein complex no IPS match
S08_106609467 8 106609467 0.32 5.13E-07 Putative polyprotein, identical F:nucleic acid binding; F:zinc ion binding; P:DNA integration no IPS match
S10_226847725 10 226847725 0.46 1.05E-06 hypothetical protein CQW23_01337 F:copper ion binding; F:oxidoreductase activity; P:oxidation-reduction process no IPS match
S11_244407143 11 244407143 0.19 7.57E-08 PREDICTED: uncharacterized protein LOC104231117 no IPS match