KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Chemicals, Peptides, and Recombinant Proteins | ||
Sodium Chloride | Fisher BioReagents | BP358–212 |
Peptone | Fisher BioReagents | BP1420–2 |
Yeast Extract | Fisher BioReagents | BP1422–500 |
Agar | Fisher BioReagents | BP1423–500 |
Yeast nitrogen base without amino acids and ammonium sulfate | Sigma | Y1251–1KG |
D-Glucose | Fisher Chemical | D16–3 |
Ammonium Sulfate | Fisher BioReagents | BP212R-1 |
Lithium Chloride | Growcells | MRGF-1336 |
Copper sulfate | Sigma | C1297–100G |
Lactose Monohydrate | Fisher Chemical | L5–500 |
D-(+)-Xylose | Sigma | X1500–500G |
Critical Commercial Assays | ||
RNeasy Mini Kit | QIAGEN | 74106 |
MaterPure Yeast DNA Purification Kit | Lucigen | MPY80200 |
SuperScript III First-Strand Synthesis System | Invitrogen | 18080051 |
Power SYBR Green PCR Master Mix | Applied Biosystems | 4367659 |
Q5 High-Fidelity 2X Mater Mix | New England BioLabs | M0492L |
Nextera DNA Flex Library Prep | Illumina | 20018705 |
Nextera DNA CD Indexes | Illumina | 20018708 |
Deposited Data | ||
List of all mutations identified in this study | This paper | Data S1 |
Experimental Models: Organisms/Strains | ||
S. cerevisiae: BY4743 | National Collection of Yeast Cultures | https://www.ncyc.co.uk/ |
Oligonucleotides | ||
PCR primers used for mutation verification | This paper | Table S3 |
Software and Algorithms | ||
Burrows-Wheeler Aligner | [45] | http://bio-bwa.sourceforge.net/bwa.shtml |
Genome Analysis Toolkit | [46] | https://software.broadinstitute.org/gatk/ |