Table 3.
Transcript profiles of key genes involved in selected biological processes (P_7d_vs_F_7d.DEG_down).
| Category | Gene ID | Fold change | Annotation |
|---|---|---|---|
| Stress response | AT3G03341 | -2.430404376 | Cold-regulated protein |
| Stress response | AT2G42530 | -2.380403804 | Encodes COR15B, protects chloroplast membranes during freezing |
| Stress response | AT4G37220 | -2.129808739 | Cold acclimation protein WCOR413 family |
| Stress response | AT2G42540 | -2.843307942 | Cold-regulated 15a |
| Stress response | AT4G25470 | -2.290807791 | CBF2, Freezing tolerance QTL 4 |
| Stress response | AT1G12610 | -2.499310901 | Member of the DREB subfamily |
| Stress response | AT1G33760 | -3.649080447 | Member of the DREB subfamily |
| Stress response | AT3G24500 | -2.047880715 | Multiprotein bridging factor 1C, elevated in pathogen infection |
| Stress response | AT1G66100 | -3.840042699 | Predicted pathogenesis-related protein. Belongs to thionin family |
| Stress response | AT5G36910 | -2.026354501 | Predicted pathogenesis-related protein. Belongs to thionin family |
| Stress response | AT2G26150 | -2.940925461 | Heat stress TF family. Response to misfolded protein accumulation |
| Stress response | AT5G52640 | -2.154472808 | Heat shock protein 90.1, required for RPS2-mediated resistance |
| Stress response | AT3G12580 | -1.580271342 | Heat shock protein 70 |
| Stress response | AT5G51790 | -1.719268011 | Heat shock protein 70 |
| Stress response | AT5G25240 | -1.900316368 | Stress induced protein |
| Stress response | AT1G01580 | -3.231049455 | Ferric reduction oxidase 2, ion transport, oxidation-reduction |
| Stress response | AT5G23990 | -2.600346657 | Ferric reduction oxidase 5, ion transport, oxidation-reduction |
| Stress response | AT5G05340 | -2.006149033 | Peroxidase 52, involved in lignin biosynthesis |
| Stress response | AT3G17520 | -3.339407695 | Late embryogenesis abundant protein (LEA) family protein |
| Stress response | AT1G52690 | -3.449561191 | Late embryogenesis abundant 7, LEA7 |
| Stress response | AT1G12672 | -3.512359022 | Thionin-like protein |
| Stress response | AT5G44973 | -5.991095858 | Encodes a defensin-like (DEFL) family protein |
| Stress response | AT5G51440 | -2.108071787 | HSP20-like chaperones superfamily protein |
| Stress response | AT2G30432 | -2.553689951 | TRICHOMELESS1 D43, negatively regulates trichome formation |
| Stress response | AT5G24770 | -3.499666348 | Anti-insect activity. Induced by ABA, JA, salt, drought, wounding |
| Nutrition | AT4G31940 | -8.311365602 | Involved in the early Fe deficiency response |
| Nutrition | AT4G19690 | -5.544586913 | The gene encodes Fe2+ transporter protein |
| Lipid | AT5G62040 | -2.975986193 | PEBP (phosphatidylethanolamine-binding protein) family protein |
| Lipid | AT5G59310 | -2.364963599 | Bind fatty acids and acylCoA esters and transfer phospholipids |
| Hormone response | AT3G23230 | -4.186210259 | Member of the ERF subfamily B-3 of ERF/AP2 TF family |
| Hormone response | AT1G04180 | -2.073351323 | YUCCA 9, auxin biosynthetic process, oxidation-reduction process |
| Hormone response | AT3G63060 | -2.048331651 | EDL3 is an F-box protein involved that mediated ABA signaling |
| Hormone response | AT5G58310 | -2.208068647 | Methyl IAA esterase activity in vitro |
Genes differentially expressed in 7-day-old seedlings were functionally categorized according to gene ontology (GO) at the Arabidopsis Information Resource. The key components of selected biological processes are shown to estimate their biological relevance. Genes were chosen by fold change (FC) < -2 (paper tape-sealed seedlings compared to parafilm-sealed ones).