Table 5.
Transcript profiles of key genes involved in selected biological processes (P_7d_vs_F_7d.DEG_up).
| Category | Gene ID | Fold_change | Function |
|---|---|---|---|
| Stress response | AT2G41280 | 3.356066865 | Hydrophilic protein similar to Late Embryogenesis Activated proteins |
| Stress response | AT5G44420 | 2.788950417 | Low-molecular-weight cysteine rich 77, plant defensin 1.2 |
| Stress response | AT1G13609 | 2.459469193 | Defensin-like (DEFL) family protein |
| Stress response | AT5G67060 | 2.976341798 | Defensin-like (DEFL) family protein |
| Stress response | AT3G55240 | 2.011985479 | Overexpression leads to Pseudo-Etiolation in Light phenotype |
| Stress response | AT2G26010 | 3.380716537 | Predicted pathogenesis-related protein. Belongs to PDF family |
| Stress response | AT5G63087 | 2.006385346 | Plant thionin family protein |
| Stress response | AT3G49110 | 2.221092924 | Peroxidase Perx33, generating H2O2 during defense response |
| Stress response | AT1G66390 | 3.084288122 | ATMYB90, PAP2, production of anthocyanin pigment 2 protein |
| Nutrition | AT1G47395 | 2.388950877 | Fe-uptake-inducing peptides 2, iron deficiency response |
| Nutrition | AT1G47400 | 2.803846696 | Fe-uptake-inducing peptides 3, iron deficiency response |
| Nutrition | AT2G41240 | 2.070511343 | Iron-deficiency key regulator |
| Phytohormone response | AT1G13430 | 2.541076433 | Sulfotransferase, rise in response to cytokinin treatment |
| Phytohormone response | AT5G07310 | 2.340872366 | Ethylene response factor 115 |
| Phytohormone response | AT2G47870 | 3.378422467 | ROXY5, interact with the TGA2 and suppress ORA59 promoter |
| Phytohormone response | AT1G68320 | 3.365487217 | R2R3-MYB TF, phosphate starvation responses, and GA synthesis |
| Phytohormone response | AT5G56300 | 2.132370996 | GAMT2, GA methyltransferase 2 |
| Phytohormone response | AT2G22810 | 2.027242956 | ACS4, key enzyme in the ethylene biosynthesis, induced by IAA |
| Phytohormone response | AT1G18400 | 2.224554893 | BR enhanced expression 1 |
| Development | AT4G30290 | 2.055149709 | Xyloglucan endotransglucosylase/hydrolase |
| Development | AT1G17400 | 2.133846585 | ATLAZY2, gravitropic response, and lateral root branch angle |
| Development | AT3G49970 | 3.213737238 | Phototropic-responsive NPH3 protein |
| Development | AT3G50330 | 5.529546579 | bHLH TF involved in transmitting tract and stigma development |
| Development | AT3G44990 | 2.157873748 | Regulation of lateral root development and root growth pattern |
| Development | AT3G60650 | 2.33666671 | Regulation of lateral root development and root growth pattern |
Genes differentially expressed in 7-day-old seedlings were functionally categorized according to gene ontology (GO) at the Arabidopsis Information Resource. The key components of selected biological processes are shown to estimate their biological relevance. Genes were chosen by fold change (FC) above 2 (paper tape-sealed seedlings compared to parafilm-sealed ones).