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. 2019 May 15;10:1072. doi: 10.3389/fmicb.2019.01072

Table 8.

Comparison of observed genotypic diversity (H) and expected genotypic diversity (HEQ) at mutation-drift equilibrium based on the observed number of alleles with infinite number of alleles.

Zone Test Parameter IAM TPM SMM Mode
CZ ST Number of loci with heterozygosity excess expected 6.35 6.86 7.22 Shifted
Loci with heterozygosity deficiency or excess 1/13 (P = 0.00027) 1/13 (P = 0.00070) 1/13 (P = 0.00132)
SDT T2 values (Probability) 4.024 (P = 0.00003) 3.492 (P = 0.00024) 3.168 (P = 0.00077)
WT One tail for H deficiency P = 0.99997 P = 0.99994 P = 0.99991
One tail for H excess: P = 0.00006 P = 0.00009 P = 0.00015
Two tails for H excess and deficiency: P = 0.00012 P = 0.00018 P = 0.00031
NEPZ ST Number of loci with heterozygosity excess expected 6.53 6.82 7.22 Shifted
Loci with heterozygosity deficiency or excess 0/14 (P = 0.00002) 1/13 (P = 0.00064) 1/13 (P = 0.00130)
SDT T2 values (Probability) 5.195 (P = 0.00000) 4.575 (P = 0.00000) 4.182 (P = 0.00001)
WT One tail for H deficiency P = 1.00000 P = 0.99997 P = 0.99997
One tail for H excess: P = 0.00003 P = 0.00006 P = 0.00006
Two tails for H excess and deficiency P = 0.00006 P = 0.00012 P = 0.00012
NHZ ST Number of loci with heterozygosity excess expected 6.32 6.75 7.10 Shifted
Loci with heterozygosity deficiency or excess 1/14 (P = 0.00005) 1/14 (P = 0.00012) 1/14(P = 0.00024)
SDT T2 values (Probability) 5.158 (P = 0.00000) 4.635 (P = 0.00000) 4.197 (P = 0.00001)
WT One tail for H deficiency P = 0.99997 P = 0.99995 P = 0.99962
One tail for H excess: P = 0.00005 P = 0.00008 P = 0.00050
Two tails for H excess and deficiency P = 0.00009 P = 0.00015 P = 0.00101
NWPZ ST Number of loci with heterozygosity excess expected 6.01 6.44 6.81 Shifted
Loci with heterozygosity deficiency or excess 1/14(P = 0.00003) 1/14 (P = 0.00006) 1/14 (P = 0.00014)
SDT T2 values (probability) 5.703 (P = 0.00000) 5.161 (P = 0.00000) 4.728 (P = 0.00000)
WT One tail for H deficiency P = 0.99998 P = 0.99998 P = 0.99998
One tail for H excess: P = 0.00003 P = 0.00003 P = 0.00003
Two tails for H excess and deficiency P = 0.00006 P = 0.00006 P = 0.00006

CZ, Central zone; NEPZ, North East Plain zone; NHZ, North Hill zone; NWPZ, North Western Plain zone; ST, Sign rank Test; SDT, Standardized Differences Test; WT, Wilcoxon Test; IAM, Infinite allele model; TPM, Two Phase Model; SMM, Stepwise Mutation Model of Evolution.

Probability of deviation from mutation-drift equilibrium (H>HEQ) was determined according to Cornuet and Luikart (1996).