. 2019 May 22;20:398. doi: 10.1186/s12864-019-5798-7

Table 1.

The strains used for genome comparisons in this study

“O”-group	Serovar	O antigens	Phase 1 H antigens	Phase 2 H antigens	Host	Disease in humans	Strain	Pseudogenes	Accession no.	Reference
A	Paratyphi A	1,2,12	a	NA	Humans	Typhoid fever	ATCC 9150	242	NC_006511	[9]
							AKU_12601	242	NC_011147	[6]
							ATCC 11511	242	CP019185	[14]
							CMCC50093	246	CP011967	[40]
							FDAARGOS_368	285	CP023508	Not available
B	Typhimurium	1,4,5,12	i	1,2	Broad	Gastroenteritis	14028S	130	NC_016856	[41]
C ₁	Paratyphi C	6,7,	c	1,5	Humans^a	Typhoid fever	RKS4594	285	NC_012125	[11]
	Choleraesuis	6,7	c	1,5	Pigs^a	Gastroenteritis	SCB67	347	NC_006905	[42]
D	Typhi	9,12,Vi	d	NA	Humans	Typhoid fever	Ty2	254	NC_004631	[8]
	Dublin	1,9,12	g,p	NA	Cattle^a	Gastroenteritis	CT_02021853	201	NC_011205	[43]
	Enteritis	1,9,12	g,m	NA	Broad	Gastroenteritis	P125109	140	NC_011294	[7]
	Gallinarum	1,9,12	NA	NA	Fowl	Asymptomatic	287/91	337	NC_011274	[7]
	Pullorum	(1),9,12	NA	NA	Fowl	Asymptomatic	CDC1983–67	327	NC_022221	[10]
	Panama	1,9,12	l,v	1,5	Broad	Gastroenteritis	ATCC 7378	176	CP012346	[44]
	Miami	1,9,12	a	1,5	Broad	Gastroenteritis	BAA1586	186	CP023468	This study
	Sendai	1,9,12	a	1,5	Humans	Typhoid fever	BAA1672	331	CP023470	This study

^aAdapted, but no completely restricted