Table 4.
Description of the consensus genetic map for D. alata L. by linkage groups
| Linkage group | No. of SNPs | Genetic length (cM) | Marker interval (cM)a | Max gap (cM) | No. of gaps > 5 cM | Physical length (Mb)b | Marker interval (kb)c |
|---|---|---|---|---|---|---|---|
| LG01 | 56 | 124.2 | 2.26 | 8.5 | 6 | 28.0 | 142.3 |
| LG02 | 88 | 130.6 | 1.50 | 11.3 | 2 | 33.9 | 141.7 |
| LG03 | 81 | 125.3 | 1.57 | 6.7 | 3 | 18.6 | 120.0 |
| LG04 | 125 | 182.5 | 1.47 | 11.4 | 5 | 29.9 | 126.7 |
| LG05 | 145 | 188.1 | 1.31 | 6.4 | 4 | 28.5 | 99.8 |
| LG06_M | 47 | 93.5 | 2.03 | 7.7 | 4 | 20.8 | 370.3 |
| LG06_F | 42 | 98.1 | 2.39 | 7.0 | 3 | 19.4 | 173.2 |
| LG07 | 88 | 147.8 | 1.70 | 11.2 | 8 | 19.3 | 123.0 |
| LG08 | 80 | 147.6 | 1.87 | 7.4 | 8 | 20.3 | 117.0 |
| LG09 | 90 | 98.0 | 1.10 | 13.3 | 3 | 27.6 | 133.3 |
| LG10 | 72 | 96.9 | 1.36 | 13.7 | 3 | 18.1 | 88.6 |
| LG11 | 47 | 102.1 | 2.22 | 10.5 | 5 | 15.7 | 209.1 |
| LG12 | 56 | 132.1 | 2.40 | 11.0 | 9 | 28.9 | 73.5 |
| LG13 | 65 | 100.9 | 1.58 | 14.8 | 2 | 24.6 | 220.6 |
| LG14 | 20 | 55.6 | 2.93 | 6.6 | 1 | 11.7 | 139.7 |
| LG15 | 102 | 139.3 | 1.38 | 10.8 | 2 | 18.5 | 99.6 |
| LG16 | 31 | 81.7 | 2.72 | 13.7 | 5 | 2.8 | 26.4 |
| LG17 | 83 | 177.5 | 2.17 | 25.4 | 4 | 21.3 | 165.1 |
| LG18 | 88 | 149.0 | 1.71 | 10.2 | 6 | 29.4 | 133.2 |
| LG19 | 117 | 163.2 | 1.41 | 6.5 | 4 | 39.7 | 132.4 |
| LG20 | 56 | 79.6 | 1.45 | 8.8 | 2 | 13.0 | 89.1 |
| Total | 1579 | 2613.5 | 1.68 | 442.1 | 139.1 |
For the sex-related LG6, two maps were conserved: the female-integrated map (LG6_F) and a male consensus map (LG6_M)
aMean distance between SNPs
bTotal length after reordering the D. rotundata reference genome (Tamiru et al. 2017) according to D. alata consensus map
cMedian physical distance between SNPs in the reordered D. rotundata genomic sequence