. 2019 Feb 26;132(6):1639–1659. doi: 10.1007/s00122-019-03304-5

Table 4.

Linkage disequilibrium (LD) blocks significantly associated with amino acid content (g kg⁻¹ crude protein) by multi-locus mixed model

Chr	LD block position range^a	Most significant SNP/LD block	Position	Trait environment	− log₁₀(P)
1	1237296–1314722	ss715578474	1309778	Met-OHC15	6.86***
				Met-ALL	6.26***
				Met-IL15	5.37**
3	42759210–42819489	ss715586331	42783646	Cys-IL15	5.72***
9	41468783–41529869	ss715604076	41499208	Thr-OHC15	5.66***
10	45250482–45546527	ss715607486	45325872	Thr-NC15	6.40***
11	5865872–5987980	ss715610921	5886407	Thr-IL15	5.49***
				Thr-NC15	5.08*
				Thr-ALL	5.03*
15	3863922–3985288	ss715621799	3936757	Met-ALL	6.30***
				Met-OHC15	5.74***
				Met-NC15	4.78*
18	4886585–4996669	ss715631030	4953024	Met-OHC15	5.44***
18	4886585–4996669	ss715631030	4953024	Met-ALL	4.74*
20	31554795–32384035	ss715637294	32282623	Thr-OHW14	10.88***
				Lys-OHW14	10.25***
				Thr-ALL	5.03*
				Lys-ALL	4.95*

*, suggestive threshold (25%); **, suggestive threshold (10%); ***, genome-wide significance threshold (5%)

^aLD blocks were constructed based on four-gamete method. Blocks were merged, if adjacent blocks were separated by < 10 kb