Table 3.
Percentage of sequence identities of the complete genome and different regions of PEDV strains compared with those of other PEDV strains
| Strain | 5′-UTR | ORF1a/1b | S | M | N | E | ORF3 | 3′-UTR |
|---|---|---|---|---|---|---|---|---|
| CH/BJ9/2015 | ||||||||
| Strain | CH/JX-1/2013 | LZW | LZW | USAIllinois972013, USAKansas1252014 | LZW | CH/JX-1/2013, CH/YNKM-8/2013, LZW | LZW | CH/JX-1/2013, CHYJ130330 |
| Percenta | 99.3 | 99.7 | 99.2 | 99.7 | 99.4 | 99.1 | 100 | 99.4 |
| CH/BJ2/2016 | ||||||||
| Strain | AJ1102, CH/YNKM-8/2013, LC | SHQPYM2013 | KoreaK14JB01, USAIllinois972013, USAKansas1252014 | USAIllinois972013, USAKansas1252014 | CHYJ130330 | CH/JX-1/2013, CH/YNKM-8/2013, LZW | CH/JX-1/2013, USAIllinois972013, USAKansas1252014 | CH/JX-1/2013, CHYJ130330 |
| Percenta | 98.6 | 99.2 | 98.9 | 99.7 | 98.9 | 99.6 | 99.7 | 99.4 |
| CH/BJ11/2016 | ||||||||
| Strain | AJ1102, CH/YNKM-8/2013, LC | AJ1102, CH/YNKM-8/2013, CH/JX-1/2013, LZW, SHQPYM2013, USAKansas1252014 | KoreaK14JB01, USAIllinois972013, USAKansas1252014 | USAIllinois972013, USAKansas1252014 | LZW | CH/JX-1/2013, CH/YNKM-8/2013, LZW | CH/JX-1/2013, USAIllinois972013, USAKansas1252014 | CH/JX-1/2013, CHYJ130330 |
| Percenta | 98.6 | 99.1 | 98.8 | 99.7 | 99.2 | 99.6 | 99.7 | 99.4 |
| CH/HB9/2016 | ||||||||
| Strain | ZJCZ | CHZMDZY11 | CH/GDZQ/2014 | USAIllinois972013, USAKansas1252014 | LZW | CH/JX-1/2013, CH/YNKM-8/2013, LZW | CH/GDZQ/2014 | CH/JX-1/2013, CHYJ130330 |
| Percenta | 99.7 | 99.2 | 98.9 | 99.7 | 99.2 | 99.1 | 99.6 | 99.4 |
aThe highest nucleotide precent identities of different regions