Table 4.
Significant eQTL genes also differentially expressed in T2D compared to controls in PPP dataset.
| PPP | ||||||
|---|---|---|---|---|---|---|
| Gene | SNP ID | distance | eQTL FDR | logFC | FDR | Direction of eQTL effect |
| SCTR | rs4344946 | −15760 | 0.023 | −0.78 | 0.03 | – |
| CYP2U1 | rs141713207 | −22383 | 0.002 | −0.55 | 0.01 | + |
| CYP4V2 | rs10866290 | 757 | 6.38E-11 | −0.5 | 0.05 | – |
| CASR | rs3749203 | 489 | 0.001 | −0.45 | 0.04 | + |
| ACP6 | rs28700004 | 5788 | 7.94E-08 | −0.41 | 0.01 | – |
| LOC79160 | rs3761133 | 653 | 0.015 | −0.39 | 0.03 | + |
| IGF1R | rs12591122 | 305650 | 3.08E-05 | −0.34 | 0.04 | + |
| LINC00667 | rs34361006 | 49303 | 0.032 | −0.31 | 0.02 | – |
| ACVR1B | rs2854464 | 43389 | 0.008 | −0.28 | 0.02 | + |
| KLHDC10 | rs4443587 | 68107 | 1.58E-10 | −0.25 | 0.01 | – |
| VAMP1 | rs11613996 | 22444 | 0.016 | −0.25 | 0.02 | + |
| ELP5 | rs222843 | −9867 | 1.40E-15 | −0.25 | 0.03 | + |
| RASA3 | rs9525230 | 80306 | 4.37E-07 | −0.22 | 0.04 | + |
| H2AFV | rs13245012 | −669 | 0.002 | −0.22 | 0.04 | – |
| METTL15 | rs4614434 | −52250 | 0.027 | −0.15 | 0.05 | – |
| RNF213 | rs35627722 | 15051 | 0.01 | 0.44 | 0.01 | – |
| CAST | kgp11684924 | 12272 | 4.62E-07 | 0.46 | 0.02 | + |
| ERAP1 | kgp3909205 | 15984 | 3.09E-12 | 0.49 | 0.03 | + |
| ZNF117 | rs10262238 | 121749 | 0.015 | 0.5 | 0.02 | + |
| CFLAR | rs10184098 | 9878 | 0.001 | 0.63 | 0.03 | – |
| ONECUT2 | rs514250 | 32118 | 0.008 | 0.71 | 0.04 | + |