Table 4.
Alpha biodiversity calculated for samples normalized to the lowest sequenced sample data (44,702 sequences) and for then averaged for GI Design with 95% confidence intervals.
| GI site |
GI design |
||||||
|---|---|---|---|---|---|---|---|
| Sample | Observed OTUs | Predicted OTUs (Chao1) | Shannon Index | Type | Observed OTUs | Predicted OTUs (Chao1) | Shannon Index (H′) |
| GI.0.27 | 7528 | 9736 | 7.5868 | UF | – | – | – |
| GI.3.2 | 8801 | 12762 | 7.6468 | ETP | 9143 ± 754.4 | 12852 ± 1084.58 | 7.8133 ± 0.2185 |
| GI.3.6 | 9697 | 13615 | 7.9664 | ||||
| GI.7.9 | 8699 | 11978 | 7.7683 | ||||
| GI.0.8 | 9374 | 13051 | 7.8715 | ||||
| GI.0.14 | 8800 | 11473 | 7.9340 | ETP1 | – | – | – |
| GI.3.1 | 7828 | 19289 | 7.3368 | SSIS | 8722 ± 643.7 | 13776 ± 3877.13 | 7.6792 ± 0.2530 |
| GI.4.5 | 8802 | 11727 | 7.7623 | ||||
| GI.5.2 | 8934 | 13123 | 7.6685 | ||||
| GI.10.4 | 8873 | 12255 | 7.8661 | ||||
| GI.0.3 | 9171 | 12484 | 7.7623 | ||||
| GI.8.18 | 10111 | 14512 | 8.0070 | VS (excluding GI.11.25) | 9688 ± 322.6 | 13412 ± 628.16 | 7.9383 ± 0.1162 |
| GI.8.19 | 9434 | 13838 | 7.6567 | ||||
| GI.8.20 | 10260 | 14411 | 8.0256 | ||||
| GI.11.25 | 5102 | 9127 | 5.1780 | ||||
| GI.12.26A | 10089 | 14040 | 8.1209 | ||||
| GI.12.26B | 9563 | 13095 | 7.9644 | ||||
| GI.12.26C | 9042 | 12825 | 7.7023 | ||||
| GI.0.11 | 9550 | 12120 | 7.9287 | ||||
| GI.0.21 | 8967 | 12017 | 7.8150 | ||||
| GI.0.24N | 9880 | 13628 | 8.0736 | ||||
| GI.0.24S | 9988 | 13633 | 8.0890 | ||||