Table 3.
The number and ratio of the CDS, annotated genes, and mapped sequences for the six eggplants.
| Sample | 5′ UTRA | 3′ UTRA | CDS | Total CDS ratio(%)B | Number of unigenes annotatedC | Total mappedD | |
|---|---|---|---|---|---|---|---|
| Blast | EST Scan | ||||||
| AET_SG | 12123 (23.53%) | 11626 (22.57%) | 21195 | 18652 | 77.34 | 29118 (56.51%) | 39337841 (70.78%) |
| INT_2006 | 12830 (27.99%) | 12393 (27.04%) | 20952 | 15564 | 79.66 | 28321 (61.78%) | 48949822 (72.64%) |
| MEL_HZHQ | 14230 (25.82%) | 13570 (24.62%) | 26867 | 18952 | 83.13 | 34865 (63.25%) | 51659443 (87.62%) |
| MEL_LYQ | 12908 (24.44%) | 12405 (23.49%) | 21749 | 19162 | 77.45 | 29751 (56.32%) | 52647559 (88.68%) |
| MEL_S58 | 13867 (23.63%) | 12992 (22.14%) | 26486 | 20652 | 80.33 | 35659 (60.77%) | 58745699 (87.12%) |
| SIS_2007 | 13523 (30.68%) | 14051 (31.88%) | 24478 | 11525 | 81.69 | 29221 (66.3%) | 20027221 (27.56%) |
AThe number of 5′ UTR or 3′ UTR and the ratio with the unigenes. BThe total CDS ratio with the unigenes. CThe number of unigenes annotated to the database and the ratio with the all unigenes. DThe number of high-quality reads mapped to the reference eggplant genome and the ratio with the clean reads.