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. 2019 May 16;10:1093. doi: 10.3389/fmicb.2019.01093

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Copyright © 2019 Hagey, Bhatnagar, Heguy, Karle, Price, Meyer and Maga.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Log2 fold-difference in OTU abundance from samples comparing (A) freestall to drylot (B) pasture to freestall and (C) pasture to drylot housing. Significantly changed OTU abundance are shown in red determined by an adjusted p ≤ 0.01. The most significantly changed OTU is circled and labeled with assigned taxonomy. The family Coriobacteriaceae showed the most significant change on pasture farms compared to both non-pasture systems while the order Clostridiales was most significantly changed in freestall farms compared to drylots.