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. 2019 May 16;10:1093. doi: 10.3389/fmicb.2019.01093

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Copyright © 2019 Hagey, Bhatnagar, Heguy, Karle, Price, Meyer and Maga.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Significant log2 fold-differences of bacterial families’ abundance between (A) freestall and drylots (B) pasture and freestalls and (C) pasture and drylots are presented. Each point is colored by its assigned phyla and represents an OTU that showed a significant difference in abundance between the two housing types compared. Negative values denote a log2 fold reduction of that OTU in the first housing type compared to the second. Similarly, positive values denote log2 fold increases of an OTU in the first housing type compared to the second. Comparisons of between housing types shared log2 fold differences in many of the same families. Adjusted p ≤ 0.01 considered significant.