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. 2019 May 16;10:1093. doi: 10.3389/fmicb.2019.01093

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Copyright © 2019 Hagey, Bhatnagar, Heguy, Karle, Price, Meyer and Maga.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Specific OTUs significantly associated with pasture based farms (q > 0.01), as determined by MaAsLin using a subset of six farms from the original dataset that had complete metadata records, are displayed. OTUs were collapsed and combined by their lowest assigned taxonomy and plotted by transformed [arcsin(sqrt)] abundance. Notched box plots show individual arcsine square-root transformed relative abundance’s median as well as the first and third quartiles with notches representing a 95% confidence interval of the median. Pasture farms had significantly higher amounts of Coriobacteriaceae even when dietary components, age and stage of lactation were controlled for.