Table 2. Genes showing a negative correlation with AtIPCS expression under GO term GO:0006950 (response to stress) compared to Col0.
At1-3+ over-expressing AtIPCS1-3; At1-3++ higher level expressers of AtIPCS1-3. Fold changes are the value of three technical triplicates of a transformed line. Transcripts listed had a p-value <0.001 (Wald test, cut off p-value < 0.05) and highlighted in bold are log2 fold change ≥ 2.
| GeneID | Gene annotation | At1+ | At1++ | At2+ | At2++ | At3+ | At3++ | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | ||
| AT5G47220 | ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) | -2 | 1.46E-31 | -1.7 | 4.58E-25 | -1.1 | 7.33E-15 | ||||||
| AT2G24850 | TAT3 (TYROSINE AMINOTRANSFERASE 3) | -1.8 | 6.29E-17 | -4 | 1.33E-53 | -2.6 | 3.03E-28 | -2.3 | 4.60E-26 | -1.8 | 6.10E-18 | -2.3 | 1.65E-24 |
| AT1G16420 | MC8 (METACASPASE 8) | -2 | 1.68E-07 | -1.6 | 3.84E-06 | -1.2 | 0.00047 | -1 | 0.00242862 | -1.2 | 0.00058 | ||
| AT4G12480 | PEARLI 1; LIPID BINDING A PUTATIVE LIPID TRANSFER PROTEIN | -5 | 1.37E-159 | -1.9 | 1.94E-31 | -5.1 | 7.83E-172 | -1.2 | 8.99E-13 | -2 | 3.20E-32 | ||
| AT1G78290 | SERINE/THREONINE PROTEIN KINASE | -2 | 2.05E-47 | -1.8 | 8.25E-47 | -2 | 1.39E-54 | -1 | 2.73E-20 | -1.3 | 1.51E-29 | ||
| AT4G37990 | ELI3-2 (ELICITOR-ACTIVATED GENE 3–2) | -3 | 6.02E-17 | -2.3 | 7.52E-12 | -2.3 | 2.18E-12 | -1.8 | 3.22E-08 | -1.6 | 6.77E-07 | ||
| AT3G45290 | MLO3 (MILDEW RESISTANCE LOCUS O 3) | -1 | 7.16E-12 | -1.1 | 5.16E-09 | -1.3 | 7.16E-12 | 3.50E-08 | |||||
| AT2G26020 | PDF1.2B (PLANT DEFENSIN 1.2B) | -1.9 | 8.15E-18 | -5 | 1.44E-66 | -4.9 | 1.47E-60 | -4.9 | 3.31E-62 | -2.6 | 3.65E-30 | -3.4 | 3.34E-40 |
| AT2G32680 | RLP23 (RECEPTOR LIKE PROTEIN 23) | -2 | 2.69E-17 | -2.2 | 1.35E-13 | -2.3 | 3.16E-15 | 2.85E-235 | |||||
| AT2G26560 | PLA2A (PHOSPHOLIPASE A 2A) | -3 | 1.57E-78 | -1.4 | 1.57E-26 | -2.6 | 1.57E-78 | 2.27E-14 | |||||
| AT2G14610 | PR1 (PATHOGENESIS-RELATED GENE 1) | -3.4 | 1.83E-172 | -7.3 | 4.08E-238 | -7.3 | 1.05E-206 | -7.9 | 4.60E-217 | -4.6 | 1.09E-252 | -4.9 | 2.85E-235 |
| AT2G46830 | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) | -2 | 9.82E-14 | -2 | 3.12E-12 | -1.1 | 1.04E-05 | 5.91E-13 | |||||
| AT1G06160 | ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) | -1 | 1.14E-10 | -1.4 | 9.92E-17 | -2.5 | 9.89E-37 | -1.8 | 1.67E-24 | 2.31E-20 | |||
| AT3G49620 | DIN11 (DARK INDUCIBLE 11) | -4 | 1.16E-143 | -3.2 | 7.04E-106 | -4.1 | 5.37E-147 | 3.16E-94 | |||||
| AT1G06040 | STO (SALT TOLERANCE) | -1.1 | 2.13E-28 | -1.5 | 1.78E-49 | -1.3 | 2.23E-38 | -1.1 | 8.10E-27 | -1 | 6.04E-26 | -1.5 | 2.41E-48 |
| AT1G48000 | MYB112 (MYB DOMAIN PROTEIN 112) | -1 | 8.79E-05 | -2 | 1.97E-10 | -1.2 | 5.54E-05 | -1.2 | 6.45E-05 | -1.7 | 3.23E-08 | ||
| AT2G14560 | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) | -2.7 | 5.62E-112 | -3.4 | 1.13E-162 | -4.1 | 5.67E-173 | -3.3 | 1.62E-149 | -3.2 | 9.88E-155 | -1.7 | 5.56E-82 |
| AT1G22770 | GI (GIGANTEA) | -2 | 2.40E-75 | -2.4 | 6.55E-94 | -2.3 | 8.70E-91 | -1.3 | 4.07E-33 | -1.7 | 1.27E-94 | ||
| AT5G10140 | FLC (FLOWERING LOCUS C) | -1.2 | 2.18E-09 | -1.5 | 4.16E-14 | -1.4 | 5.23E-11 | -1.3 | 4.55E-10 | -1.1 | 8.80E-12 | -1.7 | 3.25E-08 |
| AT3G1550 | ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55) | -2 | 4.16E-28 | -1.3 | 2.83E-20 | -1.5 | 4.16E-28 | ||||||
| AT1G76930 | EXT4 (EXTENSIN 4) | -3 | 1.47E-142 | -1.2 | 1.21E-28 | -3.1 | 3.77E-175 | ||||||
| AT5G44420 | AN ETHYLENE- AND JASMONATE-RESPONSIVE PLANT DEFENSIN | -2.7 | 1.49E-54 | -6.1 | 3.17E-118 | -6 | 3.77E-111 | -6.1 | 3.17E-118 | -2.7 | 1.34E-55 | -3.6 | 7.78E-78 |
| AT2G23680 | STRESS-RESPONSIVE PROTEIN | -1 | 3.11E-14 | -1.1 | 3.58E-14 | -1.3 | 1.09E-18 | ||||||
| AT1G61120 | TPS04 (TERPENE SYNTHASE 04) | -3 | 1.57E-22 | -2.6 | 2.43E-15 | -1.7 | 5.55E-08 | -1.6 | 4.61E-07 | -1.8 | 6.72E-09 | ||
| AT1G75040 | PR5 (PATHOGENESIS-RELATED GENE 5) | -1.4 | 3.27E-22 | -1.7 | 2.13E-33 | -1.5 | 1.00E-25 | -1.8 | 5.50E-34 | ||||
| AT1G52890 | ANAC019 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 19) | -2 | 4.84E-09 | -1.2 | 2.90E-05 | -1.5 | 5.04E-07 | ||||||
| AT3G57260 | PR2 (PATHOGENESIS-RELATED GENE 2) | -1.9 | 1.17E-30 | -5.3 | 4.64E-102 | -4.8 | 2.99E-86 | -4.4 | 4.08E-87 | -2 | 2.97E-36 | -2.2 | 8.40E-38 |
| AT1G18330 | EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1) | -2 | 3.87E-53 | -1.6 | 3.85E-29 | -1.9 | 4.62E-40 | -1.3 | 1.98E-23 | -1.6 | 6.68E-30 | ||
| AT1G78410 | VQ MOTIF-CONTAINING PROTEIN | -1 | 2.59E-05 | -1.8 | 9.42E-08 | -1.6 | 1.24E-06 | -1.1 | 0.00072986 | -1.2 | 0.00016391 | ||
| AT5G19880 | PEROXIDASE | -1.4 | 0.00010488 | -1 | 0.00418 | ||||||||
| AT2G18050 | HIS1-3 (HISTONE H1-3) | -1 | 8.40E-31 | -2.5 | 2.90E-96 | -1.7 | 3.90E-55 | ||||||
| AT3G04720 | PR4 (PATHOGENESIS-RELATED 4) | -1 | 8.36E-46 | -1.6 | 7.55E-69 | -1.5 | 1.20E-55 | ||||||
| AT2G43510 | TI1; SERINE-TYPE ENDOPEPTIDASE INHIBITOR | -4 | 2.98E-227 | -2.5 | 6.34E-132 | -3.9 | 2.98E-227 | -1.1 | 2.90E-37 | -1.8 | 9.93E-77 | ||
| AT3G45860 | RECEPTOR-LIKE PROTEIN KINASE | -1.5 | 6.64E-09 | -2.9 | 8.20E-25 | -2.9 | 3.03E-22 | -3 | 8.20E-25 | -1.5 | 4.12E-09 | -1.7 | 4.81E-10 |
| AT3G51660 | MACROPHAGE MIGRATION INHIBITORY FACTOR FAMILY PROTEIN | -2 | 6.63E-15 | -1.2 | 1.40E-16 | -1.1 | 6.63E-15 | ||||||
| AT1G71030 | MYBL2 (ARABIDOPSIS MYB-LIKE 2) | -2 | 4.20E-88 | -1.2 | 1.04E-29 | -1.7 | 4.26E-55 | ||||||
| AT1G57630 | DISEASE RESISTANCE PROTEIN (TIR CLASS) | 3.1 | 1.80E-25 | -1.5 | 8.34E-09 | -2.5 | 4.73E-18 | ||||||
| AT5G59780 | MYB59 (MYB DOMAIN PROTEIN 59) | -2 | 1.15E-47 | -1.2 | 6.92E-29 | -1.7 | 9.77E-56 | ||||||
| AT4G12490 | LIPID TRANSFER PROTEIN (LTP) | -1.3 | 7.93E-05 | -4.6 | 1.76E-45 | -2.8 | 8.38E-18 | -4.7 | 1.76E-45 | -1.9 | 1.32E-08 | -2.6 | 1.46E-15 |
| AT4G23210 | PROTEIN KINASE FAMILY PROTEIN ENCODES A CYSTEINE-RICH RECEPTOR-LIKE KINASE (CRK13) | -3 | 1.31E-52 | -1.7 | 8.20E-24 | -3 | 1.31E-52 | ||||||
| AT1G09080 | ATP BINDING BIP3 | -1.1 | 7.65E-06 | -2.5 | 6.79E-21 | -1.6 | 4.53E-10 | -1.6 | 6.04E-11 | ||||
| AT4G02520 | GSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) | -2 | -1.2 | 2.82E-06 | -2.9 | 4.44E-28 | -1.4 | 3.33E-08 | -1.6 | 3.75E-10 | |||
| AT2G25000 | WRKY60 | -1.2 | 7.64E-11 | -1.4 | 9.79E-15 | ||||||||
| AT1G08320 | TGA9 | -1.1 | 1.21E-22 | ||||||||||
| AT3G52430 | PAD4 | -1.0 | 1.59E-15 | ||||||||||
| AT1G80840 | WRKY40 | -1.7 | 5.02E-23 | ||||||||||
| AT4G31800 | WRKY18 | -1.0 | 1.95E-20 | ||||||||||
| AT1G01560 | MPK11 | -2.0 | 5.24E-11 | -1.5 | 4.20E-07 | ||||||||
| AT1G73805 | SARD1 | -1.5 | 3.18E-29 | -1.3 | 5.55E-20 | -1.8 | 1.56E-35 | -1.3 | 6.19E-23 | ||||
| AT4G21534 | SPHINGOSINE KINASE 2 | -1.2 | 3.12E-21 | ||||||||||
| AT3G23250 | MYB15 | -1.9 | 5.76E-16 | -2.4 | 1.09E-20 | -1.4 | 4.96E-10 | ||||||
| AT4G25470 | DREB1C | -1.3 | 3.23E-04 | -1.1 | 2.06E-03 | -1.1 | 1.21E-03 | ||||||
| AT4G06746 | RAP2.9 | -1.1 | 3.27E-13 | ||||||||||
| AT4G25470 | DREB1B | -1.1 | 0.0014182 | -1.0 | 3.36E-03 | ||||||||