Table 3. Genes down-regulated in all three AtIPCS over-expression lines compared to Col0.
At1-3+ over-expressing AtIPCS1-3; At1-3++ higher level expressors of AtIPCS1-3. Fold changes are the value of three technical triplicates of a transformed line. Transcripts listed had a p-value <0.001 (Wald test, cut off p-value < 0.05).
| Gene ID | Gene annotation | At1+ | At1 ++ | At2+ | At2++ | At3+ | At3++ | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log2 fold change | p-value | log2 fold change | p-value | log2 fold change | p-value | log2 fold change | p-value | log2 fold change | p-value | log2 fold change | p-value | ||
| AT2G26020 | PDF1.2B (PLANT DEFENSIN 1.2B) | -1.9 | 8.15E-18 | -5 | 1.44E-66 | -4.9 | 1.47E-60 | -4.9 | 3.31E-62 | -2.6 | 3.65E-30 | -3.4 | 3.34E-40 |
| AT2G24850 | TAT3 (TYROSINE AMINOTRANSFERASE 3) | -1.8 | 6.29E-17 | -4 | 1.33E-53 | -2.6 | 3.03E-28 | -2.3 | 4.60E-26 | -1.8 | 6.10E-18 | -2.3 | 1.65E-24 |
| AT2G14610 | PR1 (PATHOGENESIS-RELATED GENE 1) | -3.4 | 1.83E-172 | -7.3 | 4.08E-238 | -7.3 | 1.05E-206 | -7.9 | 4.60E-217 | -4.6 | 1.09E-252 | -4.9 | 2.85E-235 |
| AT1G06040 | STO (SALT TOLERANCE) | -1.1 | 2.13E-28 | -1.5 | 1.78E-49 | -1.3 | 2.23E-38 | -1.1 | 8.10E-27 | -1 | 6.04E-26 | -1.5 | 2.41E-48 |
| AT2G14560 | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) | -2.7 | 5.62E-112 | -3.4 | 1.13E-162 | -4.1 | 5.67E-173 | -3.3 | 1.62E-149 | -3.2 | 9.88E-155 | -2.2 | 5.56E-82 |
| AT5G10140 | FLOWERING LOCUS C | -1.2 | 2.18E-09 | -1.5 | 4.16E-14 | -1.4 | 5.23E-11 | -1.3 | 4.55E-10 | -1.1 | 8.80E-12 | -1.4 | 3.25E-08 |
| AT5G44420 | AN ETHYLENE- AND JASMONATE-RESPONSIVE PLANT DEFENSIN | -2.7 | 1.49E-54 | -6.1 | 2.23E-122 | -6 | 3.77E-111 | -6.1 | 3.17E-118 | -2.7 | 1.34E-55 | -3.6 | 7.78E-78 |
| AT3G57260 | PR2 (PATHOGENESIS-RELATED GENE 2) | -1.9 | 1.17E-30 | -5.3 | 4.64E-102 | -4.8 | 2.99E-86 | -4.4 | 4.08E-87 | -2 | 2.97E-36 | -2.2 | 8.40E-38 |
| AT3G45860 | RECEPTOR-LIKE PROTEIN KINASE | -1.5 | 6.64E-09 | -2.9 | 3.18E-24 | -2.9 | 3.03E-22 | -3 | 8.20E-25 | -1.5 | 4.12E-09 | -1.7 | 4.81E-10 |
| AT4G12490 | LIPID TRANSFER PROTEIN (LTP) | -1.3 | 7.93E-05 | -4.6 | 4.17E-43 | -2.8 | 8.38E-18 | -4.7 | 1.76E-45 | -1.9 | 1.32E-08 | -2.6 | 1.46E-15 |
| AT1G13470 | UNCHARACTERIZED | -2.1 | 2.12E-11 | -3.7 | 3.73E-29 | -3.3 | 2.67E-23 | -2.8 | 2.70E-18 | -2.1 | 6.88E-12 | -2.4 | 3.04E-14 |
| AT1G33960 | AVRRPT2-INDUCED GENE 1 | -1.5 | 6.39E-23 | -5.4 | 1.23E-127 | -5.7 | 9.38E-116 | -5.2 | 1.80E-119 | -2.2 | 7.45E-48 | -3.3 | 6.79E-81 |
| AT3G47480 | CALCIUM-BINDING EF-HAND FAMILY PROTEIN | -1.3 | 3.75E-11 | -3.0 | 3.27E-39 | -2.8 | 4.26E-33 | -3.3 | 6.57E-42 | -1.6 | 4.36E-16 | -2.2 | 5.55E-24 |
| AT4G03450 | ANKYRIN REPEAT FAMILY PROTEIN | -2.0 | 3.19E-10 | -3.4 | 9.96E-24 | -3.1 | 1.96E-20 | -3.2 | 1.03E-21 | -2.3 | 8.75E-13 | -2.1 | 1.90E-10 |
| AT4G23150 | CYSTEIN-RICH RLK | -1.7 | 5.61E-07 | -3.2 | 1.05E-20 | -2.9 | 5.61E-18 | -3.1 | 5.53E-20 | -2.1 | 1.08E-09 | -2.5 | 2.97E-13 |
| AT5G52760 | COPPER TRANSPORT PROTEIN FAMILY | -1.2 | 4.82E-05 | -2.6 | 2.28E-17 | -2.4 | 3.65E-14 | -2.7 | 1.53E-17 | -1.4 | 5.87E-07 | -2.2 | 2.08E-12 |
| AT5G54610 | BDA1 | -2.9 | 1.16E-25 | -4.2 | 8.48E-45 | -4.0 | 6.73E-39 | -3.7 | 2.34E-36 | -2.9 | 1.54E-26 | -2.2 | 4.99E-16 |
| AT5G10760 | AED1 | -1.7 | 2.88E-39 | -4.6 | 1.85E-126 | -4.2 | 6.95E-105 | -4.1 | 1.41E-112 | -2.1 | 1.09E-55 | -1.9 | 6.10E-45 |
| AT5G60900 | RLK1 | -1.1 | 9.02E-06 | -2.9 | 1.86E-24 | -2.3 | 1.51E-16 | -2.8 | 2.43E-22 | -1.3 | 1.25E-07 | -1.5 | 2.05E-09 |
| AT2G18660 | EGC2 | -1.6 | 2.23E-11 | -3.5 | 8.48E-35 | -3.9 | 7.62E-38 | -3.5 | 1.52E-33 | -2.3 | 8.03E-20 | -2.6 | 6.45E-22 |
| AT2G26400 | ARD1 | -2.0 | 2.90E-12 | -2.2 | 6.94E-15 | -2.9 | 2.32E-20 | -2.3 | 1.82E-15 | -2.4 | 2.33E-16 | -3.1 | 9.05E-23 |
| AT2G29120 | GLR2.7 | -1.2 | 6.10E-09 | -2.3 | 6.40E-25 | -1.8 | 1.01E-15 | -2.0 | 9.39E-20 | -1.0 | 1.54E-07 | -1.4 | 3.64E-11 |
| AT3G28510 | AAA-ATPase | -2.1 | 2.93E-23 | -1.4 | 2.97E-13 | -2.9 | 1.42E-32 | -1.8 | 1.70E-17 | -1.5 | 2.91E-14 | -2.2 | 6.87E-23 |
| AT1G52400 | BGLU18 | -1.4 | 1.35E-49 | -1.9 | 3.86E-91 | -1.8 | 1.92E-85 | -1.0 | 2.44E-28 | -1.1 | 2.69E-34 | -1.0 | 5.51E-28 |
| AT1G32960 | SBT3.3 | -1.4 | 5.56E-06 | -3.4 | 1.61E-25 | -3.5 | 3.54E-26 | -3.2 | 2.01E-22 | -2.0 | 6.04E-11 | -2.0 | 5.74E-10 |
| AT3G17609 | HYH | -1.7 | 1.92E-14 | -1.5 | 3.92E-12 | -1.6 | 8.78E-12 | -1.5 | 4.75E-11 | -1.5 | 1.75E-12 | -1.7 | 1.87E-13 |