Table 4. Genes showing a positive correlation with AtIPCS expression under GO term GO:0015979 (photosynthesis).
At1-3+ over-expressing AtIPCS1-3; At1-3++ higher level expressers of AtIPCS1-3. Fold changes are the value of three technical triplicates of a transformed line. Transcripts listed had a p-value <0.001 (Wald test, cut off p-value < 0.05) and highlighted in bold log2 fold change ≥ 2.
| GeneID | Gene annotation | At1+ | At1++ | At2+ | At2++ | At3+ | At3++ | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | ||
| ATCG00520 | ENCODES A PROTEIN REQUIRED FOR PHOTOSYSTEM I ASSEMBLY AND STABILITY | 1.3 | 0.000136 | 2 | 6.06E-09 | 2.4 | 3.56E-12 | 3.6 | 7.23E-26 | 2 | 1.23E-08 | ||
| ATCG01090 | ENCODES SUBUNIT OF THE CHLOROPLAST NAD(P)H DEHYDROGENASE COMPLEX NDHI | 1.5 | 1.14E-05 | 2.5 | 1.60E-13 | 2.7 | 1.01E-15 | 4 | 4.89E-33 | 2.2 | 6.40E-11 | ||
| ATCG00540 | ENCODES CYTOCHROME F APOPROTEIN | 1.1 | 0.00043 | 1.9 | 3.70E-09 | 2.2 | 1.72E-12 | 3.4 | 7.67E-27 | 1.7 | 3.65E-08 | ||
| ATCG01010 | CHLOROPLAST ENCODED NADH DEHYDROGENASE UNIT. NDHF | 2.2 | 2.06E-10 | 3.4 | 7.33E-22 | 1.8 | 2.59E-07 | ||||||
| ATCG00280 | CHLOROPLAST GENE ENCODING A CP43 SUBUNIT OF THE PHOTOSYSTEM II REACTION CENTER | 1.5 | 2.31E-06 | 1.6 | 1.08E-06 | 1.9 | 2.22E-09 | 3 | 1.05E-20 | 1.7 | 7.88E-08 | ||
| ATCG00680 | ENCODES FOR CP47, SUBUNIT OF THE PHOTOSYSTEM II REACTION CENTER | 1 | 0.000857 | 1.2 | 0.000146 | 1.5 | 8.93E-07 | 2.5 | 2.18E-15 | 1.3 | 2.90E-05 | ||
| AT4G28660 | PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) | 1.6 | 6.17E-59 | 1.2 | 8.53E-37 | 0.5 | |||||||
| ATCG01100 | NADH DEHYDROGENASE ND1 NDHA | 1.6 | 2.92E-06 | 2.6 | 2.62E-15 | 2.9 | 1.82E-18 | 4 | 3.49E-33 | 2.4 | 9.53E-13 | ||
| AT3G04790 | RIBOSE 5-PHOSPHATE ISOMERASE-RELATED | 1.8 | 1.32E-101 | 1.3 | 6.95E-58 | 0.8 | 1.3 | 1.00E-52 | |||||
| ATCG00270 | PSII D2 PROTEIN PSBD | 1.8 | 5.79E-08 | 1.9 | 4.30E-09 | 2.4 | 7.28E-13 | 3.4 | 1.13E-25 | 2.1 | 3.43E-10 | ||
| ATCG01060 | ENCODES THE PSAC SUBUNIT OF PHOTOSYSTEM I | 1.3 | 5.19E-05 | 2.2 | 3.40E-12 | 2.6 | 8.05E-17 | 3.6 | 2.28E-30 | 2.1 | 1.50E-11 | ||
| AT3G55800 | SBPASE (SEDOHEPTULOSE-BISPHOSPHATASE); | 1.2 | 1.64E-100 | 1 | 4.49E-67 | 0.3 | |||||||
| AT4G09650 | ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE); | 1.5 | 7.39E-119 | 1.2 | 3.91E-76 | 0.3 | 1.1 | 3.83E-57 | |||||
| ATCG00730 | A CHLOROPLAST GENE ENCODING SUBUNIT IV OF THE CYTOCHROME B6 | 1.3 | 2.93E-05 | 1.6 | 1.02E-06 | 1.9 | 4.38E-09 | 2.8 | 6.43E-19 | 1.6 | 3.63E-07 | ||
| ATCG01080 | NADH DEHYDROGENASE ND6 NDHG | 1.9 | 9.92E-08 | 3.1 | 5.52E-19 | 1.5 | 1.37E-05 | ||||||
| ATCG00710 | ENCODES A 8 KD PHOSPHOPROTEIN | 1 | 0.000866 | 1.2 | 1.80E-06 | 1.7 | 5.64E-08 | 2.8 | 1.16E-17 | 1.5 | 6.42E-06 | ||
| AT2G01590 | CRR3 (CHLORORESPIRATORY REDUCTION 3) | 1.2 | 1.06E-40 | 1 | 1.79E-31 | ||||||||
| ATCG00580 | PSII CYTOCHROME B559 | 1.1 | 0.0003654 | 1.3 | 8.33E-05 | 1.8 | 8.75E-09 | 2.4 | 2.18E-13 | 1.3 | 2.94E-05 | ||
| ATCG00720 | ENCODES THE CYTOCHROME B(6) SUBUNIT OF THE CYTOCHROME B6F COMPLEX | 1.1 | 0.0005436 | 1.4 | 5.73E-06 | 1.7 | 7.29E-08 | 2.9 | 4.62E-20 | 1.4 | 5.58E-06 | ||
| AT3G01440 | PSB-LIKE PROTEIN 2 (PQL2) | 1.8 | 7.06E-107 | 1.5 | 2.18E-13 | 0.5 | 4.69E-10 | 1.3 | 2.89E-50 | ||||
| AT1G14150 | PSB-LIKE PROTEIN 1 (PQL1) | 1.5 | 3.82E-75 | 1.2 | 1.54E-44 | 0.5 | 7.91E-09 | 1 | 4.06E-35 | ||||
| ATCG01110 | ENCODES THE 49KDA PLASTID NAD(P)H DEHYDROGENASE SUBUNIT H PROTEIN | 2.8 | 3.73E-19 | 4 | 4.72E-37 | 4.2 | 1.35E-40 | 4.7 | 5.23E-52 | 1 | 0.001626 | 3.6 | 5.95E-30 |
| AT1G19150 | LHCA6; CHLOROPHYLL BINDING PSI TYPE II CHLOROPHYLL A/B-BINDING PROTEIN | - | 1.2 | 2 | 2.50E-114 | 1.6 | 5.98E-73 | 0.7 | 1.71E-15 | 1.5 | 1.95E-66 | ||
| AT1G60950 | FED A; 2 IRON, 2 SULFUR CLUSTER BINDING | 1.6 | 1.03E-63 | 1.5 | 1.68E-54 | 1.2 | 1.99E-33 | ||||||
| ATCG00300 | ENCODES PSBZ, WHICH IS A SUBUNIT OF PHOTOSYSTEM II | 1.1 | 0.0022523 | 1.6 | 6.17E-06 | 1.7 | 8.98E-07 | 3.2 | 1.04E-19 | 1.6 | 2.72E-06 | ||
| ATCG00440 | ENCODES NADH DEHYDROGENASE D3 SUBUNIT OF THE CHLOROPLAST NAD(P)H DEHYDROGENASE COMPLEX NDHC | 1.3 | 0.0001679 | 2 | 3.59E-09 | 2.7 | 6.65E-16 | 3.4 | 4.14E-24 | 1.9 | 1.08E-08 | ||
| ATCG00340 | ENCODES THE D1 SUBUNIT OF PHOTOSYSTEM I AND II REACTION CENTERS. PSAB | 1.2 | 0.0001204 | 1.6 | 1.29E-06 | 1.8 | 1.35E-08 | 2.9 | 4.71E-19 | 1.6 | 1.30E-06 | ||
| ATCG00360 | ENCODES A PROTEIN REQUIRED FOR PHOTOSYSTEM I ASSEMBLY AND STABILITY | 1.5 | 6.99E-06 | 2.3 | 5.20E-12 | 2.7 | 1.25E-15 | 3.8 | 1.03E-29 | 2.1 | 4.94E-10 | ||
| AT3G16250 | NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); | 1.4 | 1.02E-79 | 1.1 | 5.91E-52 | 0.4 | 1.70E-07 | ||||||
| AT3G62410 | PROTEIN BINDING CP12-2 ENCODES A SMALL PEPTIDE FOUND IN THE CHLOROPLAST STROMA | 1.8 | 5.62E-79 | 1.4 | 5.57E-49 | 0.3 | 0.006318 | 1.5 | 2.39E-51 | ||||