Table 6. Genes up-regulated in all three AtIPCS over-expression lines compared to Col0.
At1-3+ over-expressing AtIPCS1-3; At1-3++ higher level expressers of AtIPCS1-3. Fold changes are the value of three technical triplicates of a transformed line. Transcripts listed had a p-value <0.001 (Wald test, cut off p-value < 0.05).
| GeneID | Gene annotation | At1+ | At1++ | At2+ | At2++ | At3+ | At3++ | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | log2fold | p-value | ||
| AT1G03880 | CRUCIFERIN 2 | 2.4 | 1.77E-17 | 6.9 | 2.47E-149 | 2.8 | 1.65E-22 | 4.4 | 2.05E-59 | 1.9 | 1.19E-10 | 5.5 | 6.22E-96 |
| AT1G14940 | POLYKETIDE CYCLASE | 1.3 | 0.00013457 | 3.9 | 3.80E-37 | 2.9 | 1.09E-19 | 1.2 | 0.000415868 | 1.2 | 0.000363067 | 3.9 | 5.89E-37 |
| AT1G68250 | UNCHARACTERIZED | 3.3 | 1.29E-35 | 5.5 | 4.67E-100 | 3.3 | 8.42E-35 | 4.7 | 2.00E-72 | 1.6 | 1.42E-08 | 4.7 | 1.07E-72 |
| AT1G75830 | PDF1.1 | 2.7 | 3.86E-42 | 6.1 | 4.61E-234 | 4.3 | 6.31E-116 | 4.1 | 6.34E-102 | 1.6 | 6.48E-15 | 5.3 | 1.15E-174 |
| AT4G27150 | 2S SEED STORAGE PROTEIN 2 | 3.8 | 2.16E-40 | 7.3 | 2.16E-147 | 4.7 | 1.09E-61 | 5.4 | 1.89E-81 | 2.3 | 8.24E-16 | 6.4 | 7.03E-115 |
| AT2G27380 | EPR1 | 2.9 | 3.08E-31 | 6.0 | 6.18E-135 | 5.1 | 6.03E-100 | 2.9 | 4.27E-33 | 1.5 | 4.85E-09 | 5.6 | 8.36E-120 |
| AT3G27660 | OLEO4 (OLEOSIN 4) | 2.1 | 1.35E-15 | 5.2 | 7.26E-100 | 2.8 | 6.81E-27 | 2.6 | 5.28E-23 | 1.1 | 8.65E-05 | 4.0 | 2.28E-58 |
| AT4G25140 | OLEO1 (OLEOSIN 1) | 3.5 | 4.38E-45 | 7.1 | 2.82E-192 | 4.6 | 2.85E-80 | 5.0 | 1.20E-91 | 2.5 | 1.01E-21 | 6.1 | 3.11E-141 |
| AT4G28520 | CRU3 | 5.8 | 9.91E-131 | 9.6 | 0 | 6.0 | 5.56E-142 | 7.3 | 9.09E-207 | 4.2 | 6.51E-67 | 8.3 | 2.55E-271 |
| AT5G44120 | CRA1 | 5.6 | 2.15E-133 | 9.0 | 0 | 6.8 | 2.63E-201 | 6.1 | 5.74E-158 | 3.6 | 1.13E-55 | 7.9 | 9.89E-267 |
| AT3G22640 | PAP85 | 3.2 | 2.74E-52 | 5.5 | 5.80E-166 | 3.2 | 9.47E-51 | 2.6 | 1.55E-32 | 1.5 | 6.57E-11 | 4.1 | 4.59E-89 |
| AT4G27160 | 2S SEED STORAGE PROTEIN 3 | 5.0 | 1.84E-81 | 8.5 | 2.51E-239 | 4.2 | 4.18E-58 | 6.3 | 1.28E-129 | 3.6 | 4.03E-43 | 7.3 | 2.59E-176 |
| AT4G27140 | 2S SEED STORAGE PROTEIN 1 | 4.2 | 5.35E-65 | 8.0 | 1.03E-238 | 4.3 | 1.28E-68 | 6.3 | 1.95E-148 | 3.0 | 4.86E-32 | 7.2 | 6.10E-193 |
| AT4G27170 | 2S SEED STORAGE PROTEIN 4 | 2.7 | 1.03E-19 | 5.7 | 5.84E-88 | 1.8 | 6.48E-09 | 3.9 | 2.71E-39 | 1.8 | 6.80E-09 | 4.9 | 9.93E-64 |
| AT5G54740 | LPT (LIPID TRANSFER PROTEIN) | 5.1 | 3.42E-97 | 8.2 | 3.86E-259 | 5.8 | 1.57E-127 | 6.3 | 5.98E-153 | 3.9 | 4.20E-57 | 7.7 | 9.99E-230 |