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. 2019 May 13;15(5):e1007012. doi: 10.1371/journal.pcbi.1007012

Table 3. Comparison of several variations of DoGNets and several baselines on the [Collman15] dataset.

The ‘Shallow3D’ network uses the 3D version of DoGNet, while other variants operate on 2D slices independently. Optimal performance was obtained using Shallow DoGNets.

Method params F1 Score Precision Recall AUC |DiC|
ConvNets
Direct 3392 0.69 0.79 0.62 0.88 11.19
FCN 3002 0.71 0.72 0.70 0.79 4.12
Unet 622 0.73 0.73 0.73 0.91 4.26
DoGNets
Shallow Isotropic 62 0.75 0.74 0.76 0.90 4.25
Shallow Anisotropic 107 0.75 0.75 0.76 0.88 4.26
Shallow3D 61 0.68 0.62 0.77 0.65 9.13
Deep Isotropic 140 0.73 0.77 0.71 0.97 4.99
Deep Anisotropic 230 0.71 0.77 0.33 0.87 7.72
Manually tuned methods
Nieland 2014 [38] - 0.37 0.49 0.32 0.63 16.5
Simhal 2017 [32] - 0.65 0.52 0.89 0.74 -