Table 3.
Comparison of nucleotide and amino acid sequence identities of Ych with representative members of Orthoreovirus species (%).
| Strains | λA | λB | λC | μA | μB | μNS | σC | σA | σB | σNS | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ARV-D2533/6/1-10 | nt | 94.1 | 91.7 | 87.7 | 93.4 | 89.6 | 92.1 | 85.5 | 89.6 | 91.8 | 90.3 |
| aa | 98.1 | 97.4 | 94.9 | 93.3 | 98.5 | 95.8 | 91.7 | 96.4 | 97.6 | 97.0 | |
| ARV-Ch/Tua | nt | 72.0–72.8 | 66.6–67.3 | 55.2–56.1 | 59.4–60.3 | 64.2–65.7 | 57.6–58.9 | 33.6–37.0 | 63.6–64.7 | 54.8–58.7 | 61.2–62.9 |
| aa | 84.3–85.0 | 75.4–76.3 | 54.2–55.2 | 60.4–61.7 | 69.6–72.4 | 55.8–57.6 | 21.6–24.4 | 66.7–67.6 | 51.9–55.7 | 62.8–64.9 | |
| ARV-Wa Classicalb | nt | 71.3–72.3 | 65.8–66.5 | 56.0–56.4 | 57.6–60.6 | 62.4–62.7 | 57.7–58.5 | 36.0–38.0 | 63.3–64.8 | 59.1–60.2 | 61.3–62.7 |
| aa | 83.8–84.2 | 75.5–76.4 | 55.3–55.6 | 60.0–61.1 | 66.5–66.9 | 55.8–57.4 | 24.1–25.2 | 66.2–67.1 | 55.2–57.6 | 63.3–64.9 | |
| ARV-Wa Novelc | nt | 71.4–72.1 | 65.8–66.3 | 56.0–56.4 | 60.3–60.7 | 65.7–66.0 | 57.3–57.8 | 39.6–44.5 | 63.8–64.9 | 60.6–61.6 | 60.7–62.0 |
| aa | 83.8–84.6 | 75.6–75.9 | 55.8–56.0 | 60.7–61.3 | 71.2–72.0 | 55.5–56.6 | 26.7–27.3 | 66.7–67.4 | 59.2–60.6 | 63.0–64.1 | |
| NBVd | nt | 65.3–66.0 | 36.5–56.1 | 45.8–46.7 | 49.5–50.9 | 62.7–63.1 | 28.4–48.4 | 25.8–31.1 | 56.8–58.1 | 43.2–44.2 | 55.2–55.4 |
| aa | 72.2–72.6 | 36.7–40.1 | 36.4–40.8 | 45.3–46.2 | 68.3–69.2 | 7.6–38.3 | 6.5–17.7 | 56.1–56.6 | 30.0–30.3 | 51.1–51.6 | |
| BRVe | nt | 36.7 | 53.2 | 39.8 | 44 | 47.6 | 39.8 | — | 41.6 | 35.4 | 41.4 |
| aa | 8.4 | 49.4 | 27.9 | 31.9 | 39 | 25.8 | — | 29.9 | 16.9 | 25.6 | |
| RRVf | nt | 54.4 | 55.3 | 40.7 | 46.6 | 56.5 | 39.5 | 34.2 | 42.9 | 39.5–39.9 | 44 |
| aa | 49.7 | 56.3 | 28 | 38.7 | 53 | 24.8 | 16.1 | 33.8 | 20.4–21.3 | 31 | |
| MRVg | nt | 51.0–51.3 | 53.9–54.6 | 41.0–41.8 | 40.9–41.4 | 50.4–51.0 | 38.4–40.1 | 25.3–28.5 | 41.8–43.5 | 35.4–36.4 | 40.4–41.4 |
| aa | 42.9–43.5 | 52.2–52.7 | 28.2–28.6 | 26.8–27.4 | 44.9–45.7 | 20.9–21.7 | 11.6–15.4 | 27.2–28.4 | 14.7–16.4 | 23.1–24.0 | |
aChicken (S1133, 138, 176, AVS-B, GX/2010/1, T1781) and turkey (19831M09, 22342/13, D1246) origin ARVs.
b“Classical” waterfowl origin ARVs: Muscovy duck (ZJ2000M, 815-12, D1546, D2044) and goose (D20/99).
c“Novel” waterfowl origin ARVs: Muscovy duck (ZJ00M, NP03, J18), Pekin duck (TH11, HC, 091), wild Mallard duck (SD-12) and goose (03G).
dNBVs (AF059718.1, AF059722.1, AF059726.1, AF218360.1, JF342672.1-JF342677.1, JF342666.1-JF342671.1, AY357730.1-AY357733.3, JF811580.1-JF81153.1).
eBRVs (AF059719.1, AF059723.1, AF059727.1, HQ847903.1-HQ847908.1).
fRRVs (AY238886.1, KT696547.1-KT696556.1).
gMRVs: MRV-1 (B/03), MRV-2 (BYD1), MRV-3 (T3D, ZJ2013), MRV-4 (Ndelle).
“—”: no equivalent sequence.