. 2019 Feb 19;175(2):459–472. doi: 10.1007/s10549-019-05135-w

Table 2.

Distribution of classical molecular subtypes and hallmark-tsne subtypes in breast cancer (TCGA)—2136 genes (left) and 44 genes (right)

Hallmark-tsne^a	BasL^b		ErbB2^c		LumA^d		LumB^e		NormL^f		notSure^g
1	24	21	27	27	466	464	125	125	6	6	82	82
2	105	104	6	6	12	12	3	3	6	6	18	18
3	12	12	5	5	54	56	15	15	1	1	18	18

^aHallmark-tsne: clusters based on the hallmark-tsne subtypes

^bBasL: Basal-like

^cErbB2: ErbB2/HER2-enriched

^dLumA: Luminal A

^eLumB: Luminal B

^fNormL: Normal-like

^gnotSure: types are uncertainly

Hallmark-tsne^a	BasL^b		ErbB2^c		LumA^d		LumB^e		NormL^f		notSure^g
1	24	21	27	27	466	464	125	125	6	6	82	82
2	105	104	6	6	12	12	3	3	6	6	18	18
3	12	12	5	5	54	56	15	15	1	1	18	18

Hallmark-tsne^a	BasL^b		ErbB2^c		LumA^d		LumB^e		NormL^f		notSure^g
1	24	21	27	27	466	464	125	125	6	6	82	82
2	105	104	6	6	12	12	3	3	6	6	18	18
3	12	12	5	5	54	56	15	15	1	1	18	18

Hallmark-tsne^a	BasL^b		ErbB2^c		LumA^d		LumB^e		NormL^f		notSure^g
1	24	21	27	27	466	464	125	125	6	6	82	82
2	105	104	6	6	12	12	3	3	6	6	18	18
3	12	12	5	5	54	56	15	15	1	1	18	18