Table 2.
Overview of results from candidate gene (CG)-association approach using SNPs from GBS or re-sequencing (RS)
| GBS CGs | Annotation in BARLEX | Alternative names | Approach | CG status after testing | highest –log(p of CG) | Corresponding QTL region |
|---|---|---|---|---|---|---|
| HORVU1Hr1G057860 | cytokinin oxidase/dehydrogenase 1 | AtCKX1 | GBS | potential | 2.3 | QTL-1H-3 |
| HORVU1Hr1G080950 | Glycogen synthase | HvSSIV | GBS | potential | 2.05 | QTL-1H-7 |
| HORVU1Hr1G082250 | alcohol dehydrogenase 1 | Adh2 | GBS | supported | 2.21 | QTL-1H-7 |
| HORVU1Hr1G094980 | Early flowering 3 | HvELF3 | GBS | potential | 3.26 | QTL-1H-9 |
| HORVU2Hr1G013400 | pseudo-response regulator 7 | HvPpd-H1 | RS | supported | 5.34 | QTL-2H-3 |
| HORVU2Hr1G036320 | WRKY family transcription factor family protein | HvSUSIBA2 | GBS | potential | 2.03 | QTL-2H-6 |
| HORVU2Hr1G080630 | 14–3-3-like protein GF14-B | HvGID2 | GBS | potential | 3.55 | QTL-2H-6 |
| HORVU2Hr1G075240 | Thioredoxin superfamily protein | TRX-m3 | RS | supported | 5.65 | QTL-2H-6 |
| HORVU2Hr1G075240 | Thioredoxin superfamily protein | TRX-m3 | GBS | potential | 2.73 | QTL-2H-6 |
| HORVU2Hr1G085910 | Zinc finger protein CONSTANS-LIKE 4 | HvCO4 | GBS | supported | 4.21 | QTL-2H-7 |
| HORVU2Hr1G097490 | expansin B4 | HvEXPB1 | RS | supported | 2.63 | QTL-2H-10 |
| HORVU2Hr1G097380 | pectinesterase 11 | PME5 | GBS | supported | 3.71 | QTL-2H-10 |
| HORVU2Hr1G103780 | protein kinase family protein | HERK2 | GBS | supported | 2.73 | QTL-2H-11 |
| HORVU3Hr1G075920 | Cytokinin dehydrogenase 5 | HvCKX5 | RS | potential | 2.27 | QTL-3H-4 |
| HORVU3Hr1G085050 | WUSCHEL-related homeobox 9 | WOX5 | RS | supported | 3.02 | QTL-3H-5 |
| HORVU3Hr1G089980 | gibberellin 20 oxidase 2 | HvGA20ox3 | GBS | potential | 2.51 | QTL-3H-6 |
| HORVU3Hr1G094000 | Auxin efflux carrier family protein | PIN5 | RS | supported | 3.21 | QTL-3H-7 |
| HORVU4Hr1G057550 | pseudo-response regulator 7 | HvPRR73 | GBS | supported | 6.16 | QTL-4H-4 |
| HORVU5Hr1G095530 | phytochrome C | HvPhyC | GBS | potential | 2.15 | QTL-5H-2 |
| HORVU6Hr1G058740 | cryptochrome 2 | HvCry2 | GBS | supported | 2.44 | QTL-6H-2 |
| HORVU6Hr1G076110 | Auxin efflux carrier family protein| | PIN7 | GBS | supported | 5.92 | QTL-6H-3 |
| HORVU7Hr1G074690 | glyceraldehyde-3-phosphate dehydrogenase C2 | GAPC3 | GBS | potential | 2.16 | QTL-7H-6 |
| HORVU7Hr1G120030 | Delta(24)-sterol reductase | HvDIM | GBS | supported | 2.98 | QTL-7H-10 |
| HORVU7Hr1G033820 | auxin response factor 19 | HvARF04 | RS | supported | 3.58 | no QTL between QTL-7H-4 and QTL-7H-5 |
| HORVU4Hr1G002880 | SEC7-like guanine nucleotide exchange family protein | GNOM | RS | potential | 2.02 | no QTL, between QTL-4H-1 and QTL-4H-2 |
| HORVU1Hr1G039150 | CCT motif family protein | HvCMF10 | GBS | rejected | < 2 | QTL-1H-3 |
| HORVU1Hr1G093770 | Lysine-specific demethylase 5B | HvPKDM7–1 | GBS | rejected | < 2 | QTL-1H-9 |
| HORVU2Hr1G072750 | Protein TERMINAL FLOWER 1 | HvCEN | RS | rejected | < 2 | QTL-2H-6 |
| HORVU2Hr1G113880 | AP2-like ethylene-responsive transcription factor | Zeo1/AP2 | GBS | rejected | < 2 | QTL-2H-11 |
| HORVU3Hr1G072810 | gibberellin 2-oxidase | HvGA2ox1 | GBS | rejected | < 2 | QTL-3H-3 |
| HORVU3Hr1G090980 | gibberellin 20-oxidase 3 | sdw1 / denso | GBS | rejected | < 2 | QTL-3H-7 |
| HORVU3Hr1G106880 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | Uniculme4 | GBS | rejected | < 2 | QTL-3H-10 |
| HORVU5Hr1G050510 | kinesin 4 | HvBC12/GGD1 | GBS | rejected | < 2 | QTL-5H-2 |
| HORVU5Hr1G026780 | Auxin-binding protein | ABP1 | RS | rejected | < 2 | QTL-5H-2 |
| HORVU6Hr1G056000 | CONSTANS-like 3 | HvCO5 | GBS | rejected | < 2 | QTL-6H-2 |
| HORVU6Hr1G057630 | Two-component response regulator-like PRR1 | HvPRR1 | GBS | rejected | < 2 | QTL-6H-2 |
| HORVU7Hr1G099250 | Protein VERNALIZATION INSENSITIVE 3 | PRC2 | RS | rejected | < 2 | QTL-7H-7 |
| HORVU7Hr1G110470 | Auxin efflux carrier family protein | PIN2 | GBS | rejected | < 2 | QTL-7H-9 |
| HORVU7Hr1G110470 | Auxin efflux carrier family protein | PIN2 | RS | rejected | < 2 | QTL-7H-9 |
| HORVU7Hr1G120520 | sucrose synthase 6 | HvSuSyII | GBS | rejected | < 2 | QTL-7H-10 |
| HORVU7Hr1G120960 | callose synthase 1 | HvGSL5 | GBS | rejected | < 2 | QTL-7H-10 |
If a SNP showed associations with –log(p)-value> 2, the highest association is presented. The column CG status summarizes the result of testing for associations in comparison to GWAS