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. 2019 May 24;9:7808. doi: 10.1038/s41598-019-44189-0

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Network plot displaying single-linkage clusters of confirmed S. aureus outbreak samples (blue dots) and the 45 closest other samples (red dots) based on genomic distances computed with different core genome methods. Connected dots represent clusters of samples with SNV distances below the threshold for relatedness (i.e., the 80% same-patient pair threshold in Fig. 4).