. 2019 Apr 20;16(4):537–547. doi: 10.7150/ijms.31274

Table 2.

Validated lncRNAs with significantly altered expression in OIR retinas with their nearby coding mRNA expression.

lncRNA Name	Nearby Gene	Relationship between lncRNA and nearby gene^a	lncRNA expression in microarray				mRNA expression in microarray
lncRNA Name	Nearby Gene	Relationship between lncRNA and nearby gene^a	Expression level	Fold change	P-value	FDR	Expression level	Fold change	P-value	FDR
ENSMUST00000165968	Serpina3j	upstream	up	30.11	0.0004	0.0349	up	3.64	0.0002	0.0178
	Serpina3i							13.93	0.0013	0.0382
	Serpina3g							2.58	0.0020	0.0460
	Serpina3n							21.95	0.0007	0.0300
ENSMUST00000153785	Fgf2	intronic antisense	up	58.30	0.0007	0.0411	up	2.25	0.0030	0.0526
ENSMUST00000134409	Col4a2	upstream	down	2.60	0.0123	0.1240	up	2.20	0.0019	0.0444
ENSMUST00000154285	C1qa	downstream	down	2.46	0.0129	0.1267	up	3.23	0.00005	0.0112

a, upstream or downstream, the genomic position of the coding gene is within 300kb upstream or downstream of the differentially expressed lncRNA region. Intronic antisense, the genomic position of the coding gene is located in the antisense strand of lncRNA intron.