Table 3.
Top 20 upregulated lncRNAs identified by the microarray analysis.
| SeqName | P-value | FDR | Fold Change | Regulation | Strand | Relationship | OIR 1 | OIR 2 | OIR 3 | Control 1 | Control 2 | Control 3 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSMUST00000153785 | 0.000717 | 0.041078 | 58.296270 | up | - | intronic antisense | 12.748014 | 10.783653 | 11.958061 | 6.109738 | 5.469894 | 6.314101 |
| ENSMUST00000165968 | 0.000409 | 0.034852 | 30.109933 | up | - | intergenic | 8.449434 | 6.941674 | 7.838548 | 2.890805 | 2.992069 | 2.610279 |
| ENSMUST00000128755 | 0.004214 | 0.079423 | 13.221707 | up | - | exon sense-overlapping | 9.614595 | 7.468352 | 8.861307 | 4.748751 | 5.034332 | 4.986661 |
| AK043298 | 0.015278 | 0.137199 | 10.588272 | up | - | intronic antisense | 7.422740 | 4.626696 | 6.647810 | 2.720966 | 2.776193 | 2.986901 |
| ENSMUST00000084713 | 0.015632 | 0.138298 | 9.804105 | up | + | natural antisense | 8.423589 | 6.038433 | 7.642350 | 3.663067 | 4.905065 | 3.656082 |
| AK044286 | 0.005517 | 0.087954 | 8.824446 | up | - | intergenic | 6.588106 | 5.014738 | 5.853877 | 3.387348 | 2.322640 | 2.322215 |
| TCONS_00000098 | 0.013644 | 0.130032 | 7.373443 | up | + | intronic antisense | 6.376250 | 4.062401 | 5.523742 | 2.322231 | 2.322640 | 2.670507 |
| AK076995 | 0.014021 | 0.132143 | 7.371760 | up | + | intergenic | 13.404888 | 11.165535 | 12.681263 | 9.608284 | 9.148856 | 9.848519 |
| AK002906 | 0.020071 | 0.154626 | 7.029474 | up | - | intronic antisense | 7.653271 | 5.450538 | 6.973938 | 4.281011 | 3.129105 | 4.227380 |
| ENSMUST00000109960 | 0.002150 | 0.059662 | 6.769551 | up | + | exon sense-overlapping | 8.496722 | 7.243502 | 7.930245 | 4.976211 | 4.986118 | 5.430960 |
| ENSMUST00000124916 | 0.014606 | 0.134809 | 6.111074 | up | + | exon sense-overlapping | 7.861429 | 5.677544 | 6.847170 | 4.184352 | 4.080745 | 4.286768 |
| uc007mmy.1 | 0.008464 | 0.106702 | 5.992399 | up | - | intergenic | 7.930451 | 6.101834 | 7.092284 | 4.500277 | 4.299462 | 4.575429 |
| ENSMUST00000174161 | 0.035534 | 0.197475 | 5.468632 | up | - | exon sense-overlapping | 7.971536 | 5.525110 | 6.948038 | 4.791939 | 3.697002 | 4.602203 |
| uc029vmu.1 | 0.009057 | 0.109769 | 5.298308 | up | - | intergenic | 7.293197 | 5.804285 | 6.782840 | 4.464540 | 3.703680 | 4.495507 |
| uc008nps.1 | 0.003121 | 0.070411 | 5.271589 | up | - | exon sense-overlapping | 7.488088 | 6.237517 | 6.975574 | 4.357455 | 4.696039 | 4.452972 |
| ENSMUST00000174778 | 0.004496 | 0.080692 | 5.242659 | up | - | intergenic | 5.510269 | 4.239752 | 4.961743 | 2.322231 | 2.896421 | 2.322215 |
| ENSMUST00000140000 | 0.003751 | 0.074957 | 5.202250 | up | + | natural antisense | 11.112645 | 9.900810 | 10.629968 | 8.155371 | 7.874338 | 8.476307 |
| ENSMUST00000139730 | 0.003180 | 0.070468 | 5.121506 | up | - | exon sense-overlapping | 6.917978 | 5.666435 | 6.221930 | 4.070318 | 3.890004 | 3.776317 |
| NR_102319 | 0.030389 | 0.184947 | 5.035999 | up | + | intergenic | 8.337279 | 5.907723 | 7.444553 | 4.834966 | 4.924242 | 4.933513 |
| ENSMUST00000128518 | 0.003024 | 0.069549 | 4.980561 | up | + | intronic antisense | 11.217601 | 10.039138 | 10.746596 | 8.285136 | 8.572280 | 8.196994 |
Note: FDR: false discovery rate; Fold change: the absolute ratio (no log scale) of average normalized intensities between two groups (Control vs OIR); OIR 1-3 and Control 1-3: each sample's normalized intensity (log2 scale). Similarly hereinafter.